CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96699
KRG96700
KRG99088
KRG99853
KRG99893
KRG99895
KRG99898
KRH03947
KRH57220
KRH68429

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10710.1	KRG96699	AT1G09270.1	21798944
AT5G10710.1	KRG96700	AT1G09270.1	21798944
AT5G10710.1	KRG99088	AT1G09270.1	21798944
AT5G10710.1	KRG99853	AT1G09270.1	21798944
AT5G10710.1	KRG99893	AT1G09270.1	21798944
AT5G10710.1	KRG99895	AT1G09270.1	21798944
AT5G10710.1	KRG99898	AT1G09270.1	21798944
AT5G10710.1	KRH68429	AT1G09270.1	21798944
AT5G10710.1	KRH03947	AT4G24840.1	21798944
AT5G10710.1	KRH57220	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61930	Soybean	nucleus	91.76	90.73
VIT_04s0008g02440.t01	Wine grape	nucleus	67.61	73.01
PGSC0003DMT400004637	Potato	cytosol	64.77	70.81
Solyc08g077520.2.1	Tomato	cytosol, nucleus	63.07	68.94
GSMUA_AchrUn_...	Banana	cytosol	32.1	67.26
HORVU6Hr1G002620.4	Barley	cytosol	36.65	64.5
KXG38548	Sorghum	cytosol	54.83	60.88
AT5G10710.1	Thale cress	cytosol	53.12	59.94
TraesCS6D01G016500.1	Wheat	cytosol	56.25	58.41
TraesCS6A01G013400.1	Wheat	cytosol	56.25	58.41
TraesCS6B01G020300.2	Wheat	nucleus	56.25	58.24
CDX78396	Canola	endoplasmic reticulum, golgi	56.25	57.56
HORVU6Hr1G002520.13	Barley	cytosol, nucleus	55.68	56.98
CDX70366	Canola	endoplasmic reticulum, extracellular, golgi	57.1	56.46
TraesCS3D01G493500.1	Wheat	cytosol, extracellular, plastid	18.75	55.46
Bra006073.1-P	Field mustard	endoplasmic reticulum	55.97	54.12
Zm00001d032978_P001	Maize	cytosol	23.58	53.55
GSMUA_AchrUn_...	Banana	cytosol	21.02	49.01
Os04t0284100-01	Rice	cytosol	14.49	47.22

Protein Annotations

EMBL:ACUP02003423	EnsemblPlants:KRH52593	EnsemblPlantsGene:GLYMA_06G076400	EntrezGene:100818803	GO:GO:0000776	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0034508
InterPro:CENP-O	PANTHER:PTHR14582	PFAM:PF09496	ProteinID:KRH52593	ProteinID:KRH52593.1	UniParc:UPI000233A5D0
UniProt:I1K938	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:5905512..5912377

Molecular Weight (calculated)

40553.4 Da

IEP (calculated)

5.494

GRAVY (calculated)

-0.438

Length

352 amino acids

Sequence
(BLAST)

001: MESDVEESMR KRPRKYPFSA DSSSRKQFEQ YSGRTFAIMG EVNFMQDDDN RLEITRTKFG SLLKRHGDLT ERLARDSDKI IFERLQKEFE AARASQTEEI
101: CLDGEEWNDG LLATIRERVH MEADRKAMQG DADILACPLE KITYKIGNKV ICCLEGARIG VQYETSFAGE PCEFYHCVLE SKSFLEKMTV LEHTVPFFLP
201: IREIENDLHS SNAMKLIDHV GDLLQAFVDR REQVRLIKEL YGNQIRELYH SLPYHMVEFV LDDSDCKVTV SLRYADLISV LPTRISVLAW PMFNKNTMSR
301: KEDGLSGSHS SPIRLTYAED ALRTMSLPEA YAEIVLNLPQ AIRQTYHQKA TA

Best Arabidopsis Sequence Match ( AT5G10710.1 )
(BLAST)

001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS

Arabidopsis Description

Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.