Factsheet for VIT_04s0008g02440.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0060g00930.t01
VIT_17s0000g01560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10710.1	VIT_14s0060g00930.t01	AT1G09270.1	21798944
AT5G10710.1	VIT_17s0000g01560.t01	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	39.26	76.19
PGSC0003DMT400004637	Potato	cytosol	73.31	74.22
Solyc08g077520.2.1	Tomato	cytosol, nucleus	70.55	71.43
HORVU6Hr1G002620.4	Barley	cytosol	42.94	70.0
KRH61930	Soybean	nucleus	74.85	68.54
KRH52593	Soybean	nucleus	73.01	67.61
KXG38548	Sorghum	cytosol	62.88	64.67
TraesCS6A01G013400.1	Wheat	cytosol	65.03	62.54
TraesCS6B01G020300.2	Wheat	nucleus	64.72	62.06
TraesCS6D01G016500.1	Wheat	cytosol	64.42	61.95
AT5G10710.1	Thale cress	cytosol	59.2	61.86
HORVU6Hr1G002520.13	Barley	cytosol, nucleus	64.42	61.05
TraesCS3D01G493500.1	Wheat	cytosol, extracellular, plastid	21.78	59.66
CDX78396	Canola	endoplasmic reticulum, golgi	61.96	58.72
CDX70366	Canola	endoplasmic reticulum, extracellular, golgi	62.58	57.3
GSMUA_AchrUn_...	Banana	cytosol	26.07	56.29
Bra006073.1-P	Field mustard	endoplasmic reticulum	61.35	54.95
Zm00001d032978_P001	Maize	cytosol	26.07	54.84
Os04t0284100-01	Rice	cytosol	17.48	52.78

Protein Annotations

EntrezGene:100259361	wikigene:100259361	MapMan:35.2	ProteinID:CCB46643	ProteinID:CCB46643.1	InterPro:CENP-O
UniProt:F6H3A6	EMBL:FN595231	GO:GO:0000776	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0034508	EntrezGene:LOC100259361	wikigene:LOC100259361
PFAM:PF09496	PANTHER:PTHR14582	UniParc:UPI000210A070	ArrayExpress:VIT_04s0008g02440	EnsemblPlantsGene:VIT_04s0008g02440	EnsemblPlants:VIT_04s0008g02440.t01
unigene:Vvi.5944	RefSeq:XP_002282558	RefSeq:XP_002282558.1	:	:	:

Description

No Description!

Coordinates

chr4:+:1997028..2008169

Molecular Weight (calculated)

37415.1 Da

IEP (calculated)

7.251

GRAVY (calculated)

-0.358

Length

326 amino acids

Sequence
(BLAST)

001: MYGWLRCGSK KRKNFIQAED VRLETTRARF SNVIKRHGQL IERLSRDSDK MIFERLQKEF DAARASQTEE ILLDGEQWND GLLATIRERV HMEADRKAMP
101: GDSSMLPDPL FHGKTTYKVG NKVICCLEGA RIGIQYETSF AGEPCELYHC VLESKSFLEK MTVIEHTVPF FLPIREAEND LLSSNAMKFI DHVGELLQAY
201: VDRREQVRLI KELYGNQIEE LYHSLPYHMI EFALDDSDCK ITVSLRYADL LSVLPTRIRV LAWPMQPSKK IITSTGTIGR KGNSVPARLS YAEDALRTMS
301: LPEAYAEIVL NLPRVLQQNF QHRGSA

Best Arabidopsis Sequence Match ( AT5G10710.1 )
(BLAST)

001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS

Arabidopsis Description

Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.