Factsheet for Solyc08g077520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g100720.2.1
Solyc08g006660.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10710.1	Solyc01g100720.2.1	AT1G09270.1	21798944
AT5G10710.1	Solyc08g006660.1.1	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004637	Potato	cytosol	96.27	96.27
VIT_04s0008g02440.t01	Wine grape	nucleus	71.43	70.55
HORVU6Hr1G002620.4	Barley	cytosol	41.93	67.5
GSMUA_AchrUn_...	Banana	cytosol	34.47	66.07
KRH61930	Soybean	nucleus	69.88	63.2
KRH52593	Soybean	nucleus	68.94	63.07
KXG38548	Sorghum	cytosol	60.25	61.2
TraesCS6B01G020300.2	Wheat	nucleus	63.66	60.29
AT5G10710.1	Thale cress	cytosol	58.39	60.26
TraesCS6D01G016500.1	Wheat	cytosol	63.04	59.88
TraesCS6A01G013400.1	Wheat	cytosol	62.73	59.59
HORVU6Hr1G002520.13	Barley	cytosol, nucleus	62.42	58.43
TraesCS3D01G493500.1	Wheat	cytosol, extracellular, plastid	21.43	57.98
CDX78396	Canola	endoplasmic reticulum, golgi	59.94	56.1
CDX70366	Canola	endoplasmic reticulum, extracellular, golgi	61.18	55.34
Bra006073.1-P	Field mustard	endoplasmic reticulum	59.94	53.02
Zm00001d032978_P001	Maize	cytosol	24.84	51.61
GSMUA_AchrUn_...	Banana	cytosol	23.29	49.67
Os04t0284100-01	Rice	cytosol	15.84	47.22

Protein Annotations

EnsemblPlants:Solyc08g077520.2.1	EnsemblPlantsGene:Solyc08g077520.2	GO:GO:0000776	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0034508	InterPro:CENP-O	PANTHER:PTHR14582
PFAM:PF09496	UniParc:UPI000276C4A2	UniProt:K4CNB1	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr8:-:61504594..61512386

Molecular Weight (calculated)

36750.0 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.334

Length

322 amino acids

Sequence
(BLAST)

001: MGEVNYMREE DVKLDAVRAR FSNVLKRHSE LAERLSRDSD KSIFDRLQKE FEAARASQTQ ELILKGEQWN DGLLATIRER VHMEAERKAM QIPGDTTQLP
101: IPFHDKITYK VGNKVICCLD GARIGIQYDT SYAGESCDLY HCVLESKSFL EKMTVLEHTI PFFLPIREAE NEFLSSNAIR FIDHVGDLLQ AYVDRREQVR
201: LIKELYGNQI GELYHSLPYH MIEFVIEDFD SKVTVGLRYA DLISTLPTGV SVLAWPMHQS KRSSDKIASH LKGNGVGSHP IPARLTYAEH ALRTMGLPQA
301: YAEIVLNLRQ ALHDMFPHTS ST

Best Arabidopsis Sequence Match ( AT5G10710.1 )
(BLAST)

001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS

Arabidopsis Description

Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.