CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96699
KRG96700
KRG99088
KRG99853
KRG99893
KRG99895
KRG99898
KRH03947
KRH57220
KRH68429

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10710.1	KRG96699	AT1G09270.1	21798944
AT5G10710.1	KRG96700	AT1G09270.1	21798944
AT5G10710.1	KRG99088	AT1G09270.1	21798944
AT5G10710.1	KRG99853	AT1G09270.1	21798944
AT5G10710.1	KRG99893	AT1G09270.1	21798944
AT5G10710.1	KRG99895	AT1G09270.1	21798944
AT5G10710.1	KRG99898	AT1G09270.1	21798944
AT5G10710.1	KRH68429	AT1G09270.1	21798944
AT5G10710.1	KRH03947	AT4G24840.1	21798944
AT5G10710.1	KRH57220	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52593	Soybean	nucleus	90.73	91.76
VIT_04s0008g02440.t01	Wine grape	nucleus	68.54	74.85
PGSC0003DMT400004637	Potato	cytosol	65.17	72.05
GSMUA_AchrUn_...	Banana	cytosol	33.15	70.24
Solyc08g077520.2.1	Tomato	cytosol, nucleus	63.2	69.88
HORVU6Hr1G002620.4	Barley	cytosol	37.08	66.0
KXG38548	Sorghum	cytosol	55.34	62.15
AT5G10710.1	Thale cress	cytosol	52.81	60.26
TraesCS6D01G016500.1	Wheat	cytosol	56.74	59.59
TraesCS6A01G013400.1	Wheat	cytosol	56.74	59.59
TraesCS6B01G020300.2	Wheat	nucleus	56.74	59.41
HORVU6Hr1G002520.13	Barley	cytosol, nucleus	56.46	58.43
CDX78396	Canola	endoplasmic reticulum, golgi	56.18	58.14
CDX70366	Canola	endoplasmic reticulum, extracellular, golgi	57.02	57.02
TraesCS3D01G493500.1	Wheat	cytosol, extracellular, plastid	18.82	56.3
Bra006073.1-P	Field mustard	endoplasmic reticulum	56.18	54.95
Zm00001d032978_P001	Maize	cytosol	23.88	54.84
GSMUA_AchrUn_...	Banana	cytosol	21.07	49.67
Os04t0284100-01	Rice	cytosol	14.33	47.22

Protein Annotations

EntrezGene:100786656	MapMan:35.2	EMBL:ACUP02002201	InterPro:CENP-O	EnsemblPlantsGene:GLYMA_04G075200	GO:GO:0000776
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0034508	UniProt:I1JUM3	EnsemblPlants:KRH61930	ProteinID:KRH61930	ProteinID:KRH61930.1	PFAM:PF09496
PANTHER:PTHR14582	UniParc:UPI00023C054F	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:6294567..6302523

Molecular Weight (calculated)

40954.8 Da

IEP (calculated)

5.340

GRAVY (calculated)

-0.440

Length

356 amino acids

Sequence
(BLAST)

001: MESDVEESLR KRPRKYPFSA DSSSRKQFEQ YSGRTFAFTG EVNFMQDDDN RLEITRTKFG SLLKRHGDLT ERLARDSDKI IFERLQKEFE AARASQTEEI
101: CLDGEEWNDG LLATIRERVH MEADRKAMHG DADILACPQD KITYKIGNKQ VICCLEGARI GVQYETSFAG EPCEFYHCVL ESKSFLEKMT VLEHTVPFFL
201: PIREIENDLL SSNAMKFIDH VGDLLQAFVD RREQVRLIKE LYGNQIRELY HSLPYHMIEF VLDDSDCKVT VSLRYADLIS VLPTRISVLA WPMFNKNTMA
301: TLSRKEDGLS GSHSSPIRLT YAEDALRTMS LPEAYAEIVL NLPQALQQTY HQKAPA

Best Arabidopsis Sequence Match ( AT5G10710.1 )
(BLAST)

001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS

Arabidopsis Description

Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.