Factsheet for GSMUA_AchrUn_randomP12710_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P22290_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10710.1	GSMUA_Achr8P22290_001	AT1G09270.1	21798944
AT5G10710.1	GSMUA_AchrUn_...	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G493500.1	Wheat	cytosol, extracellular, plastid	46.43	65.55
HORVU6Hr1G002620.4	Barley	cytosol	69.05	58.0
VIT_04s0008g02440.t01	Wine grape	nucleus	76.19	39.26
PGSC0003DMT400004637	Potato	cytosol	70.83	36.96
Solyc08g077520.2.1	Tomato	cytosol, nucleus	66.07	34.47
KXG38548	Sorghum	cytosol	64.88	34.38
TraesCS6A01G013400.1	Wheat	cytosol	69.05	34.22
TraesCS6D01G016500.1	Wheat	cytosol	68.45	33.92
TraesCS6B01G020300.2	Wheat	nucleus	68.45	33.82
HORVU6Hr1G002520.13	Barley	cytosol, nucleus	69.05	33.72
KRH61930	Soybean	nucleus	70.24	33.15
KRH52593	Soybean	nucleus	67.26	32.1
CDX78396	Canola	endoplasmic reticulum, golgi	57.74	28.2
AT5G10710.1	Thale cress	cytosol	51.79	27.88
CDX70366	Canola	endoplasmic reticulum, extracellular, golgi	57.74	27.25
Bra006073.1-P	Field mustard	endoplasmic reticulum	57.14	26.37
Os04t0284100-01	Rice	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0
Zm00001d032978_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP12710_001	EnsemblPlants:GSMUA_AchrUn_randomT12710_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG12710_001	GO:GO:0000776	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0034508	InterPro:CENP-O
PANTHER:PTHR14582	PFAM:PF09496	UniParc:UPI000295B593	UniProt:M0U8N0	MapMan:35.2	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG12710_001]

Coordinates

chrchrUn_random:-:61190077..61194418

Molecular Weight (calculated)

19100.2 Da

IEP (calculated)

5.658

GRAVY (calculated)

0.083

Length

168 amino acids

Sequence
(BLAST)

001: MSVIEHTVPF FLPIREAEND LLSSNAIKFI DYVGEILQSY VERREQVRLI KELYGNQIGE LFHSLSYNLI EFVLEDFDCK VTVSLRYADL VSILPSRIRV
101: LAWPVHPSKK ILAVDRKESG PALAQSIPSR LSYAEDALRT MSLPEAYAEI VLNLPRVLQQ MFPHLGGA

Best Arabidopsis Sequence Match ( AT5G10710.3 )
(BLAST)

001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFQALVHME ADRKADNGNA GFSLVCHPEE RITYRVGNKV
101: ICCLDGSRIG IQFETSTAGE TYEVYHCVLE SKSFLEKMIV LEHTIPFFLP LSDLENDLLF SNAKKFIDNV GDLLQAYVDR KEQVRLIKEL FGHQISEIYH
201: SLPYHMIEFS MDDCDCKFVV SLRYGDLLCE LPTKVRILVW PMHHLSKKQC TSPGSPAIPV RLPFAEDAFR IQSLPEAYAE IMPNMPNEIR QLFQTSPS

Arabidopsis Description

Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.