Factsheet for TraesCS6D01G251200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G290700.1	Wheat	cytosol	98.84	99.07
TraesCS6A01G263700.1	Wheat	cytosol	97.92	98.37
HORVU6Hr1G066870.1	Barley	cytosol	96.99	97.67
EES07426	Sorghum	cytosol	84.72	85.31
Os02t0690600-01	Rice	cytosol	83.56	84.94
Zm00001d017671_P001	Maize	cytosol	83.33	84.71
TraesCS2D01G449900.1	Wheat	cytosol	66.67	68.9
OQU80253	Sorghum	mitochondrion	34.72	68.81
OQU81292	Sorghum	mitochondrion	33.1	66.51
GSMUA_Achr3P18060_001	Banana	cytosol	43.75	49.61
GSMUA_Achr5P13860_001	Banana	cytosol	28.7	40.92
PGSC0003DMT400004594	Potato	cytosol	38.19	40.54
Solyc01g080920.2.1	Tomato	cytosol	37.96	40.1
TraesCS3D01G370000.1	Wheat	cytosol	30.56	31.58
TraesCS6D01G367600.1	Wheat	cytosol	28.7	29.31
TraesCS6D01G367100.1	Wheat	cytosol	28.24	29.05
TraesCS6D01G167300.1	Wheat	cytosol	28.47	28.41
TraesCS2D01G296100.1	Wheat	cytosol	27.55	27.61
TraesCS4D01G229900.1	Wheat	mitochondrion	27.78	27.27
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	26.39	26.7
TraesCS7D01G201600.1	Wheat	mitochondrion	26.62	26.02
TraesCS6D01G237900.1	Wheat	extracellular	23.61	25.06
TraesCS6D01G292200.1	Wheat	mitochondrion	26.16	24.89
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	25.0	24.49
TraesCS2D01G305400.1	Wheat	cytosol	22.22	24.0
TraesCS7D01G393700.1	Wheat	extracellular, vacuole	20.83	23.56
TraesCS4D01G237600.1	Wheat	cytosol	23.61	22.22
TraesCS1D01G274600.1	Wheat	mitochondrion	23.15	22.08

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF29	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS6D01G251200	EnsemblPlants:TraesCS6D01G251200.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:354991251..354992549

Molecular Weight (calculated)

46658.7 Da

IEP (calculated)

5.311

GRAVY (calculated)

0.199

Length

432 amino acids

Sequence
(BLAST)

001: MDMDMEEPPH LFLCPISMEL MQEPVTVSTG VTYDRRSIER WLFSYGRATC PATMQPLANL DLTPNHTLAR VISSWLDRGS PSSSSSSSSS PSTSSLSSPV
101: HELGTPLTRM LEEERLRSAL GDLEETPFKV TALKSMRSCM AGDVAMQIIF VASGGVEAVG RVMAQALAES GAGGDFSAFT VCEEAAAVLA ALPLSDKASV
201: GLVLAPECLR PVMALLQRGS AEARLHAMDI LTKISSAGAG DHWTAGIDVD DVLKSLLELL SDEVSARLSS RALDVLLDVV ERSPSGRAKA VEVGAVHVLV
301: ELLVVDADDR HVAERILLLL KRLCKCPEGR LAFAEHDLSV AAVARTMLRV SDLATQLAVK VLWLVSMVAQ SEKVLEDMVL TGAVAKLLGL LHVESAPSTK
401: QKTVRMVRIH GVFWRQYPCF PTDLKDYLRL LD

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.