Factsheet for GSMUA_Achr7P03220_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...	golgi
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	GSMUA_Achr10P...	AT4G25200.1	21798944
AT3G52450.1	GSMUA_Achr10P...	AT1G07000.1	23170036
AT3G52450.1	GSMUA_Achr10P...	AT1G07000.1	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G123130.1	Barley	cytosol	9.03	60.87
GSMUA_Achr5P01000_001	Banana	cytosol	64.52	56.34
GSMUA_Achr10P...	Banana	cytosol	59.68	50.68
GSMUA_Achr11P...	Banana	cytosol	59.03	49.06
GSMUA_Achr8P30400_001	Banana	cytosol	58.06	49.05
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	60.32	45.5
Solyc01g007030.2.1	Tomato	cytosol	30.97	45.5
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	60.0	45.26
PGSC0003DMT400055045	Potato	cytosol	30.65	45.02
VIT_06s0009g00320.t01	Wine grape	cytosol	59.35	44.44
CDX78096	Canola	cytosol	55.48	44.22
Bra017278.1-P	Field mustard	cytosol	58.39	43.93
CDY32070	Canola	cytosol	58.39	43.93
CDY40422	Canola	cytosol	58.39	43.93
KRH22633	Soybean	cytosol, nucleus	56.77	43.67
Os01t0865700-00	Rice	plastid	57.1	43.49
KRH26691	Soybean	cytosol	54.19	43.41
CDX79645	Canola	cytosol	57.1	43.38
CDX75084	Canola	cytosol	56.77	43.35
GSMUA_Achr11P...	Banana	cytosol	50.97	43.17
Bra023044.1-P	Field mustard	cytosol	56.77	43.03
CDY23218	Canola	cytosol	54.84	42.93
HORVU3Hr1G083500.1	Barley	cytosol	57.1	42.86
AT2G35930.1	Thale cress	cytosol	56.77	42.82
PGSC0003DMT400050493	Potato	cytosol	55.81	42.82
CDX84587	Canola	cytosol	56.45	42.79
CDX84168	Canola	cytosol	55.81	42.61
TraesCS3D01G370000.1	Wheat	cytosol	57.42	42.58
TraesCS3B01G409400.1	Wheat	cytosol	57.1	42.45
Bra005309.1-P	Field mustard	cytosol	52.9	42.38
CDX95337	Canola	cytosol	55.81	42.3
CDY59599	Canola	cytosol	55.81	42.3
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	55.81	42.3
Os04t0686000-01	Rice	cytosol	56.13	42.13
KRH72176	Soybean	cytosol	56.77	42.11
Solyc11g068920.1.1	Tomato	cytosol	54.84	42.08
EES03937	Sorghum	plastid	55.16	41.91
TraesCS3A01G376900.1	Wheat	cytosol	56.45	41.87
Zm00001d042738_P001	Maize	cytosol	54.84	41.67
KRH32856	Soybean	cytosol	56.13	41.43
Solyc01g007010.2.1	Tomato	cytosol	54.52	41.42
PGSC0003DMT400054949	Potato	cytosol	54.19	41.38
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	54.19	41.38
Solyc01g009330.1.1	Tomato	cytosol	56.77	41.31
KRG96257	Soybean	cytosol	55.81	41.29
KRH68014	Soybean	cytosol	55.81	41.19
KRG96268	Soybean	cytosol	55.48	41.05
KRH35744	Soybean	cytosol	54.84	40.57
Bra012803.1-P	Field mustard	cytosol	55.16	40.43
PGSC0003DMT400055051	Potato	cytosol	51.29	40.36
PGSC0003DMT400055050	Potato	cytosol	50.97	40.31
AT3G52450.1	Thale cress	cytosol	56.45	40.23
Solyc01g007020.2.1	Tomato	cytosol	52.58	39.95
Bra033430.1-P	Field mustard	cytosol	54.52	39.86
OQU85086	Sorghum	cytosol	54.84	39.81
Bra006925.1-P	Field mustard	cytosol	55.81	39.77
EES06927	Sorghum	cytosol	54.19	39.62
KRH25324	Soybean	cytosol	45.48	38.84
TraesCS6B01G421900.1	Wheat	cytosol	52.26	38.57
TraesCS6D01G367100.1	Wheat	cytosol	52.26	38.57
PGSC0003DMT400038197	Potato	cytosol	56.13	38.33
TraesCS6D01G367600.1	Wheat	cytosol	52.26	38.3
TraesCS6A01G382300.1	Wheat	cytosol	51.94	38.15
TraesCS6B01G420600.1	Wheat	cytosol	51.61	38.1
TraesCS6B01G421400.1	Wheat	cytosol	51.61	38.1
EES13136	Sorghum	cytosol	51.61	37.56
Os02t0539200-01	Rice	cytosol	53.55	37.56
Zm00001d016730_P001	Maize	cytosol	52.58	37.39
TraesCS6A01G382800.1	Wheat	cytosol	50.65	37.2
HORVU0Hr1G003810.1	Barley	cytosol	51.61	37.12
TraesCS2A01G298000.1	Wheat	cytosol	51.61	37.12
TraesCS2B01G314500.1	Wheat	cytosol	51.29	36.89
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	21.29	36.87
TraesCS2D01G296100.1	Wheat	cytosol	50.97	36.66
HORVU6Hr1G089560.1	Barley	plastid	53.23	36.59
HORVU6Hr1G089590.1	Barley	plastid	53.23	36.5
PGSC0003DMT400054947	Potato	cytosol	34.84	35.76
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	45.16	35.71
Zm00001d003745_P001	Maize	nucleus	51.29	35.49
KXG26241	Sorghum	cytosol	51.94	34.85
PGSC0003DMT400054948	Potato	cytosol	31.61	34.39
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	46.77	33.96
TraesCS2B01G601300.1	Wheat	cytosol	46.45	33.72
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	46.45	33.72
GSMUA_Achr9P29630_001	Banana	cytosol	66.45	33.33
GSMUA_Achr1P16250_001	Banana	cytosol	41.94	31.94
GSMUA_Achr3P18060_001	Banana	cytosol	37.42	30.45
TraesCS6B01G209000.1	Wheat	cytosol	40.97	30.02
TraesCS6A01G176800.1	Wheat	cytosol	41.61	29.86
GSMUA_Achr6P02470_001	Banana	mitochondrion	36.13	29.47
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	40.97	29.33
TraesCS6D01G167300.1	Wheat	cytosol	40.65	29.1
GSMUA_Achr10P...	Banana	cytosol	35.16	28.99
HORVU2Hr1G123050.1	Barley	cytosol	30.97	28.57
Os12t0161100-00	Rice	cytosol	39.68	28.02
GSMUA_Achr7P18640_001	Banana	mitochondrion	34.19	27.97
KXG23010	Sorghum	cytosol	40.65	27.75
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	30.65	27.54
GSMUA_Achr6P11310_001	Banana	cytosol	33.23	27.11
GSMUA_Achr11P...	Banana	mitochondrion	36.77	26.82
GSMUA_Achr8P30420_001	Banana	mitochondrion	21.94	24.91
GSMUA_Achr1P13220_001	Banana	cytosol	30.65	23.99
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	30.32	23.62
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	30.32	23.44
GSMUA_Achr5P13860_001	Banana	cytosol	22.9	23.43
GSMUA_Achr3P02030_001	Banana	plastid	31.29	23.15
GSMUA_Achr5P01020_001	Banana	cytosol	28.39	21.95
GSMUA_Achr6P25670_001	Banana	cytosol	30.0	21.73
GSMUA_Achr2P08620_001	Banana	cytosol	29.68	21.2
GSMUA_Achr3P25750_001	Banana	cytosol	29.03	20.98
GSMUA_Achr6P18140_001	Banana	cytosol	27.42	20.78
GSMUA_Achr8P04940_001	Banana	cytosol	28.71	20.6
GSMUA_Achr4P07400_001	Banana	cytosol	28.39	20.28
GSMUA_Achr10P...	Banana	plastid	24.52	19.79
Zm00001d023480_P001	Maize	cytosol	35.16	19.5

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr7G03220_001	EnsemblPlants:GSMUA_Achr7P03220_001
EnsemblPlants:GSMUA_Achr7T03220_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0TEB2	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF11	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000295837A	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Putative E3 ubiquitin-protein ligase PUB23 [Source:GMGC_GENE;Acc:GSMUA_Achr7G03220_001]

Coordinates

chr7:+:2568959..2570395

Molecular Weight (calculated)

34101.4 Da

IEP (calculated)

6.341

GRAVY (calculated)

0.001

Length

310 amino acids

Sequence
(BLAST)

001: MEGVEIPPYF LCPISLQLMK DPVTLSTGIT YDRESIERWI FSGGHNTCPV TKRALPDCEV TPNHTLRRLI QAWCTVNASS GAKLPQSQLS SNEEVDDGLE
101: STGACDEALN ILHSLTISEG GLLDLLINLG EELFQEIVNV IHDRISNQET RAALHALIEA CPCARNRIKA VNAGAVHVLI ELLLEEDDRR ICELALVAMD
201: RLCGCAEGRA ELVGHAAGIT VVSKKILRVS EMASERAVRI LHSVARHSAT PRLLQEMMQM GVVSKLCLVL QVDCKAKTKE KAKEILSMHS RVWRSSPCLS
301: PQFQVSYPSS

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.