Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | golgi |
| GSMUA_Achr10P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G35930.1 | GSMUA_Achr10P... | AT4G25200.1 | 21798944 |
| AT3G52450.1 | GSMUA_Achr10P... | AT1G07000.1 | 23170036 |
| AT3G52450.1 | GSMUA_Achr10P... | AT1G07000.1 | 23170036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 61.92 | 60.59 |
| GSMUA_Achr8P30400_001 | Banana | cytosol | 60.82 | 60.49 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 50.68 | 59.68 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 49.86 | 51.27 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 57.53 | 51.09 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 57.26 | 50.85 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 24.66 | 50.28 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 55.07 | 48.55 |
| PGSC0003DMT400050493 | Potato | cytosol | 53.42 | 48.27 |
| Solyc11g068920.1.1 | Tomato | cytosol | 52.88 | 47.77 |
| KRH22633 | Soybean | cytosol, nucleus | 52.6 | 47.64 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 52.33 | 47.04 |
| PGSC0003DMT400054949 | Potato | cytosol | 52.33 | 47.04 |
| GSMUA_Achr11P... | Banana | cytosol | 47.12 | 46.99 |
| Solyc01g007030.2.1 | Tomato | cytosol | 27.12 | 46.92 |
| PGSC0003DMT400055045 | Potato | cytosol | 27.12 | 46.92 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 52.33 | 46.7 |
| PGSC0003DMT400055051 | Potato | cytosol | 50.14 | 46.45 |
| PGSC0003DMT400055050 | Potato | cytosol | 49.86 | 46.43 |
| Solyc01g007010.2.1 | Tomato | cytosol | 51.78 | 46.32 |
| KRH26691 | Soybean | cytosol | 49.04 | 46.25 |
| KRH72176 | Soybean | cytosol | 52.88 | 46.17 |
| Solyc01g007020.2.1 | Tomato | cytosol | 51.51 | 46.08 |
| KRG96257 | Soybean | cytosol | 52.88 | 46.06 |
| Solyc01g009330.1.1 | Tomato | cytosol | 53.7 | 46.01 |
| KRG96268 | Soybean | cytosol | 52.6 | 45.82 |
| CDX78096 | Canola | cytosol | 48.49 | 45.5 |
| KRH68014 | Soybean | cytosol | 52.33 | 45.48 |
| KRH35744 | Soybean | cytosol | 51.78 | 45.11 |
| KRH32856 | Soybean | cytosol | 51.78 | 45.0 |
| CDY23218 | Canola | cytosol | 48.77 | 44.95 |
| CDX95337 | Canola | cytosol | 50.14 | 44.74 |
| CDY32070 | Canola | cytosol | 50.41 | 44.66 |
| CDY59599 | Canola | cytosol | 49.86 | 44.5 |
| Bra017278.1-P | Field mustard | cytosol | 50.14 | 44.42 |
| CDY40422 | Canola | cytosol | 50.14 | 44.42 |
| CDX79645 | Canola | cytosol | 49.59 | 44.36 |
| CDX75084 | Canola | cytosol | 49.32 | 44.34 |
| AT2G35930.1 | Thale cress | cytosol | 49.86 | 44.28 |
| Bra005309.1-P | Field mustard | cytosol | 46.85 | 44.19 |
| CDX84168 | Canola | cytosol | 49.04 | 44.09 |
| KRH25324 | Soybean | cytosol | 43.84 | 44.08 |
| Bra023044.1-P | Field mustard | cytosol | 49.32 | 44.01 |
| CDX84587 | Canola | cytosol | 49.04 | 43.77 |
| Bra033430.1-P | Field mustard | cytosol | 50.41 | 43.4 |
| Bra012803.1-P | Field mustard | cytosol | 49.86 | 43.03 |
| PGSC0003DMT400038197 | Potato | cytosol | 53.15 | 42.73 |
| PGSC0003DMT400054948 | Potato | cytosol | 32.88 | 42.11 |
| AT3G52450.1 | Thale cress | cytosol | 50.14 | 42.07 |
| Bra006925.1-P | Field mustard | cytosol | 50.14 | 42.07 |
| PGSC0003DMT400054947 | Potato | cytosol | 34.79 | 42.05 |
| GSMUA_Achr1P16250_001 | Banana | cytosol | 40.0 | 35.87 |
| GSMUA_Achr3P18060_001 | Banana | cytosol | 33.97 | 32.55 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 52.05 | 30.74 |
| GSMUA_Achr9P08750_001 | Banana | cytosol, plasma membrane, plastid | 28.22 | 29.86 |
| GSMUA_Achr10P... | Banana | cytosol | 30.14 | 29.26 |
| GSMUA_Achr6P11310_001 | Banana | cytosol | 30.41 | 29.21 |
| GSMUA_Achr7P18640_001 | Banana | mitochondrion | 29.86 | 28.76 |
| GSMUA_Achr11P... | Banana | mitochondrion | 33.42 | 28.71 |
| GSMUA_Achr6P02470_001 | Banana | mitochondrion | 29.59 | 28.42 |
| GSMUA_Achr1P13220_001 | Banana | cytosol | 29.32 | 27.02 |
| GSMUA_Achr6P25670_001 | Banana | cytosol | 31.51 | 26.87 |
| GSMUA_Achr8P30420_001 | Banana | mitochondrion | 19.73 | 26.37 |
| GSMUA_Achr3P02030_001 | Banana | plastid | 30.14 | 26.25 |
| GSMUA_Achr7P23310_001 | Banana | cytosol, peroxisome, plastid | 28.22 | 25.88 |
| GSMUA_Achr5P13860_001 | Banana | cytosol | 21.37 | 25.74 |
| GSMUA_Achr2P20690_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 28.22 | 25.69 |
| GSMUA_Achr3P25750_001 | Banana | cytosol | 29.04 | 24.71 |
| GSMUA_Achr2P08620_001 | Banana | cytosol | 29.32 | 24.65 |
| GSMUA_Achr8P04940_001 | Banana | cytosol | 29.04 | 24.54 |
| GSMUA_Achr10P... | Banana | plastid | 24.93 | 23.7 |
| GSMUA_Achr5P01020_001 | Banana | cytosol | 26.03 | 23.69 |
| GSMUA_Achr6P18140_001 | Banana | cytosol | 25.75 | 22.98 |
| GSMUA_Achr4P07400_001 | Banana | cytosol | 27.12 | 22.81 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr10G15800_001 | EnsemblPlants:GSMUA_Achr10P15800_001 |
| EnsemblPlants:GSMUA_Achr10T15800_001 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | UniProt:M0RIK5 | PFAM:PF04564 |
| PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF11 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 |
| UniParc:UPI00029576BC | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
Putative E3 ubiquitin-protein ligase PUB23 [Source:GMGC_GENE;Acc:GSMUA_Achr10G15800_001]
Coordinates
chr10:-:23598339..23599538
Molecular Weight (calculated)
40385.7 Da
IEP (calculated)
7.722
GRAVY (calculated)
0.058
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGVLEVPEY YLCPISLQMM RDPVTVTTGI TYDRESIERW LFSGKHRDCP VTKQPLPPEL DLTPNHTLRR LIQAWCVEHA SDGVERFPTP RPTVDKSQIA
101: AILDEVVIPQ TRMSALQRLK SVVLESDRNR RFVEESGAAD LLVSIIREQE ECNDGDEALA ILCSLQISGE RLLDLLRRND DLIGTLTEEF FSGIVKGLQD
201: KVSRQATKAA LQILAGVCCC KRNKVKAVRA GAVFVLIELL LGETERRRCE MLLAVLDQLC GCAEGRAEVV AHAAGISVVS KKILRVSKLA SAMSARILCS
301: VAKLSPSPPV LQEMLQVGAV SKLCLLLQVD CGVRLKDKAQ EILKLHSRVW RSSPCLPPLL LASYP
101: AILDEVVIPQ TRMSALQRLK SVVLESDRNR RFVEESGAAD LLVSIIREQE ECNDGDEALA ILCSLQISGE RLLDLLRRND DLIGTLTEEF FSGIVKGLQD
201: KVSRQATKAA LQILAGVCCC KRNKVKAVRA GAVFVLIELL LGETERRRCE MLLAVLDQLC GCAEGRAEVV AHAAGISVVS KKILRVSKLA SAMSARILCS
301: VAKLSPSPPV LQEMLQVGAV SKLCLLLQVD CGVRLKDKAQ EILKLHSRVW RSSPCLPPLL LASYP
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.