Factsheet for GSMUA_Achr7P23310_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	56.03	55.61
HORVU2Hr1G076490.1	Barley	mitochondrion	11.81	54.02
VIT_04s0044g01460.t01	Wine grape	cytosol	48.99	48.87
TraesCS2B01G323600.1	Wheat	cytosol	47.49	47.25
TraesCS2D01G305400.1	Wheat	cytosol	47.24	47.0
TraesCS2A01G307000.1	Wheat	cytosol	45.48	46.77
OQU81614	Sorghum	cytosol	45.98	45.98
KRH53906	Soybean	cytosol	45.48	45.94
KRH64033	Soybean	cytosol	45.23	45.8
Zm00001d003624_P001	Maize	cytosol	45.48	45.25
TraesCS7A01G399900.1	Wheat	extracellular, vacuole	43.22	44.91
TraesCS7D01G393700.1	Wheat	extracellular, vacuole	42.96	44.76
Os04t0437300-01	Rice	cytosol	47.49	44.37
HORVU7Hr1G093780.1	Barley	cytosol, endoplasmic reticulum, extracellular	43.22	43.99
KRH40934	Soybean	cytosol	42.71	43.81
TraesCS7B01G300000.1	Wheat	cytosol, extracellular, nucleus	42.21	43.75
KRH59579	Soybean	cytosol	39.7	42.25
PGSC0003DMT400060272	Potato	cytosol	41.96	41.34
Solyc05g056500.1.1	Tomato	cytosol	41.46	41.15
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	26.88	31.01
GSMUA_Achr8P30420_001	Banana	mitochondrion	20.85	30.4
GSMUA_Achr7P03220_001	Banana	cytosol	23.62	30.32
GSMUA_Achr5P01000_001	Banana	cytosol	25.88	29.01
GSMUA_Achr10P...	Banana	cytosol	25.88	28.22
GSMUA_Achr7P18640_001	Banana	mitochondrion	26.13	27.44
GSMUA_Achr6P11310_001	Banana	cytosol	26.13	27.37
GSMUA_Achr6P02470_001	Banana	mitochondrion	25.63	26.84
GSMUA_Achr1P13220_001	Banana	cytosol	26.63	26.77
GSMUA_Achr11P...	Banana	cytosol	24.37	26.5
GSMUA_Achr8P30400_001	Banana	cytosol	24.37	26.43
GSMUA_Achr10P...	Banana	cytosol	24.87	26.33
GSMUA_Achr6P25670_001	Banana	cytosol	28.14	26.17
GSMUA_Achr11P...	Banana	mitochondrion	27.64	25.88
GSMUA_Achr11P...	Banana	cytosol	23.87	25.47
GSMUA_Achr3P18060_001	Banana	cytosol	24.12	25.2
GSMUA_Achr6P18140_001	Banana	cytosol	24.37	23.72
GSMUA_Achr1P16250_001	Banana	cytosol	23.87	23.34
GSMUA_Achr5P01020_001	Banana	cytosol	22.86	22.69
GSMUA_Achr10P...	Banana	plastid	21.86	22.66
GSMUA_Achr3P25750_001	Banana	cytosol	24.12	22.38
GSMUA_Achr8P04940_001	Banana	cytosol	24.12	22.22
GSMUA_Achr3P02030_001	Banana	plastid	23.37	22.2
GSMUA_Achr2P08620_001	Banana	cytosol	23.62	21.66
GSMUA_Achr4P07400_001	Banana	cytosol	23.37	21.43
GSMUA_Achr5P13860_001	Banana	cytosol	16.08	21.12
GSMUA_Achr9P29630_001	Banana	cytosol	25.38	16.34

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr7G23310_001	EnsemblPlants:GSMUA_Achr7P23310_001	EnsemblPlants:GSMUA_Achr7T23310_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M0TK17	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF103
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000296E50B	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Putative U-box domain-containing protein 26 [Source:GMGC_GENE;Acc:GSMUA_Achr7G23310_001]

Coordinates

chr7:+:25579820..25581016

Molecular Weight (calculated)

43399.4 Da

IEP (calculated)

8.766

GRAVY (calculated)

0.199

Length

398 amino acids

Sequence
(BLAST)

001: MSIPELFRCP ISLDLFADPV TLSTGQTYDR ASIEKWLGYG NSTCPVTMQR LHDKSLVPNH TLRHLIEQWF LTASVHGDGL VLMDPINSMD ISLSELKRNL
101: RLPTSTLTTK LETLRIIKVL SSESSVRQAS LVQAGFFQLL LHVLFQAPVA HNAEVTELAL DGVLNLLPSA DLESLNMLRK ESSLTQLVFL LDQSNVKIKT
201: ALCCLLETIA ACSATQELCL MLGRRQRVLQ ILVSLLQQKS DAQASEAAVR AVCSLCSSEA NRATAIREGA VDGLIAYLAD TGCAPRSRNR SAARALATLE
301: LLLGLEIGKR KMNKNPDAIA TLVKMVFRVP SDQRGSEHAV GSLLLVCCDS ATVRREAIDA GVLTKLLLLL QSQSSAQAKT KARALLKLLI PVIKKQVL

Best Arabidopsis Sequence Match ( AT1G49780.1 )
(BLAST)

001: MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F

Arabidopsis Description

PUB26U-box domain-containing protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA4]
SUBAcon: [cytoskeleton,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.