Factsheet for TraesCS2B01G323600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G076490.1	Barley	mitochondrion	21.75	100.0
TraesCS2D01G305400.1	Wheat	cytosol	98.75	98.75
TraesCS2A01G307000.1	Wheat	cytosol	95.0	98.19
Os04t0437300-01	Rice	cytosol	81.0	76.06
Zm00001d003624_P001	Maize	cytosol	73.0	73.0
OQU81614	Sorghum	cytosol	72.5	72.86
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	54.25	54.11
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	47.25	47.49
VIT_04s0044g01460.t01	Wine grape	cytosol	42.5	42.61
TraesCS7B01G300000.1	Wheat	cytosol, extracellular, nucleus	39.75	41.41
KRH40934	Soybean	cytosol	38.75	39.95
KRH53906	Soybean	cytosol	38.75	39.34
KRH59579	Soybean	cytosol	36.75	39.3
KRH64033	Soybean	cytosol	38.0	38.68
Solyc05g056500.1.1	Tomato	cytosol	38.0	37.91
PGSC0003DMT400060272	Potato	cytosol	37.75	37.38
TraesCS6B01G268300.1	Wheat	extracellular	32.75	32.19
TraesCS6B01G421400.1	Wheat	cytosol	29.0	27.62
TraesCS6B01G421900.1	Wheat	cytosol	29.0	27.62
TraesCS6B01G420600.1	Wheat	cytosol	28.75	27.38
TraesCS3B01G409400.1	Wheat	cytosol	28.25	27.1
TraesCS2B01G315100.1	Wheat	cytosol	28.5	25.85
TraesCS2B01G601300.1	Wheat	cytosol	27.0	25.29
TraesCS7B01G105600.1	Wheat	mitochondrion	27.75	24.89
TraesCS2B01G314500.1	Wheat	cytosol	25.75	23.9
TraesCS4B01G236200.1	Wheat	cytosol	27.25	23.75
TraesCS4B01G228700.1	Wheat	mitochondrion	25.75	23.41
TraesCS2B01G471900.1	Wheat	cytosol	24.25	23.21
TraesCS6B01G342800.1	Wheat	mitochondrion	25.75	22.69
TraesCS6B01G290700.1	Wheat	cytosol	24.0	22.27
TraesCS6B01G209000.1	Wheat	cytosol	23.5	22.22
TraesCS1B01G284200.1	Wheat	mitochondrion	23.5	20.75

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF103	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS2B01G323600	EnsemblPlants:TraesCS2B01G323600.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:462882838..462884444

Molecular Weight (calculated)

42021.0 Da

IEP (calculated)

8.625

GRAVY (calculated)

0.206

Length

400 amino acids

Sequence
(BLAST)

001: MSVPHLFRCP ISLDIFTDPV TLCTGQTYDR QCIERWLADG HRTCPVTMQA LGDGDTTVLV PNRTLRHLIE RWLSAATDHS LPESADDDPS LAALKRCLQS
101: DATSVAAKIG ALKKVLALAS ESDVGRACML QLGFLCVLLP LVFHAAPAAP AERHAEAEEL ALQCALSLMP SNAAAPQLDC LNMLKKEDNL ASFVRLLGRG
201: SGRAKAGLCR LLETVATAAA TRDLALVVAA SPRVWQALLP LLQQHAGPAT DARASEAAVR AIAAVCAAEP ARGSAIHHGA VGALFRHLSW WAYGKGGGAV
301: SSALAAVEAL AETEAGRRAV ARAPGATRIL VRHVFMMSSS NDGSEHAAAA LLAVCRESRA ARSEAVGAGV VTQLLLLLQS QCGARAKAKA RALLKLLKSR

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.