Factsheet for TraesCS5B01G519400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G274800.1
TraesCS1B01G284200.1
TraesCS1D01G274600.1
TraesCS2A01G298600.1
TraesCS2B01G315100.1
TraesCS2D01G296700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33940.1	TraesCS1A01G274800.1	AT5G09800.1	21798944
AT4G33940.1	TraesCS1B01G284200.1	AT5G09800.1	21798944
AT4G33940.1	TraesCS1D01G274600.1	AT5G09800.1	21798944
AT4G33940.1	TraesCS2A01G298600.1	AT5G09800.1	21798944
AT4G33940.1	TraesCS2B01G315100.1	AT5G09800.1	21798944
AT4G33940.1	TraesCS2D01G296700.1	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	100.0	100.0
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	98.48	98.98
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	82.74	85.34
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	60.91	64.86
Solyc11g027820.1.1	Tomato	cytosol	12.69	62.5
GSMUA_Achr8P08140_001	Banana	plasma membrane	57.87	61.96
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	57.36	60.75
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	52.79	56.52
AT1G72175.1	Thale cress	cytosol, nucleus, plasma membrane	50.25	53.51
VIT_18s0041g00290.t01	Wine grape	plasma membrane	50.25	53.23
CDX96380	Canola	cytosol, endoplasmic reticulum, plasma membrane	49.75	52.97
Bra016082.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	49.75	52.97
PGSC0003DMT400068737	Potato	endoplasmic reticulum, nucleus, plasma membrane	49.24	52.43
CDX72875	Canola	cytosol, nucleus, plasma membrane	49.24	52.43
CDY25740	Canola	cytosol, nucleus, plasma membrane	48.73	51.34
Bra012331.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	48.73	51.34
CDY12526	Canola	cytosol, nucleus, plasma membrane	48.22	50.8
KRH64784	Soybean	nucleus	47.21	50.0
Solyc11g027810.1.1	Tomato	plasma membrane	38.07	46.88
AT1G22510.2	Thale cress	mitochondrion	41.12	39.9
TraesCS3B01G567600.1	Wheat	mitochondrion	40.61	39.02
Bra011479.1-P	Field mustard	cytosol	31.47	26.27
CDX75389	Canola	cytosol	31.47	26.27
PGSC0003DMT400061164	Potato	cytosol, nucleus, peroxisome	29.95	26.11
Solyc01g103970.2.1	Tomato	cytosol	29.95	25.99
CDY49386	Canola	nucleus	29.95	25.65
Bra017614.1-P	Field mustard	nucleus	30.46	25.64
CDX72441	Canola	cytosol, nucleus, peroxisome	28.93	25.33
CDX69014	Canola	cytosol	30.96	24.7
AT4G33940.1	Thale cress	cytosol	29.44	22.14
Solyc01g103980.2.1	Tomato	mitochondrion	29.95	18.91
PGSC0003DMT400061161	Potato	nucleus	29.44	18.71

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:DUF1232	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF06803	PFAM:PF13920	ScanProsite:PS00518
PFscan:PS50089	PANTHER:PTHR22894	PANTHER:PTHR22894:SF5	InterPro:RNF170	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5B01G519400	EnsemblPlants:TraesCS5B01G519400.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:682176846..682179858

Molecular Weight (calculated)

22184.2 Da

IEP (calculated)

7.450

GRAVY (calculated)

0.276

Length

197 amino acids

Sequence
(BLAST)

001: MSSAAAAASS SASPVPPEDD VCSVCHDRFR IPCQANCSHW FCGECIIRVW NHGAAVQPCK CPICRRLINL LVPANVSDDQ NDDPQLQRVL GEIQHYNHIF
101: GGAPRSLTQR LQDLPFFIRR LFRELMDPQR TLPLVFRARM ILMVILSGVY VLSPVDILPE SVLGLFGFFD DFLILVIVFL HLAAVYRSLL LYRHGGH

Best Arabidopsis Sequence Match ( AT1G72175.1 )
(BLAST)

001: MNSPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRHISLLV PSEDTIRDRN DATVKEVLGN LETYNRLFGG RSSSLVQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS

Arabidopsis Description

E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:Q93WJ5]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.