Factsheet for Bra012331.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25740	Canola	cytosol, nucleus, plasma membrane	99.47	99.47
Bra016082.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	76.47	77.3
Solyc11g027820.1.1	Tomato	cytosol	15.51	72.5
PGSC0003DMT400068737	Potato	endoplasmic reticulum, nucleus, plasma membrane	68.98	69.73
Solyc11g027810.1.1	Tomato	plasma membrane	56.68	66.25
AT1G22510.2	Thale cress	mitochondrion	71.12	65.52
VIT_18s0041g00290.t01	Wine grape	plasma membrane	64.17	64.52
KRH64784	Soybean	nucleus	63.64	63.98
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	54.01	54.59
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	51.34	51.61
GSMUA_Achr8P08140_001	Banana	plasma membrane	50.27	51.09
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	50.27	49.21
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	51.34	48.98
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	51.34	48.73
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	51.34	48.73
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	42.78	43.48
TraesCS3B01G567600.1	Wheat	mitochondrion	44.38	40.49
TraesCS3D01G511300.1	Wheat	mitochondrion	43.85	39.81
HORVU3Hr1G111110.1	Barley	plastid	34.76	37.79
Bra011479.1-P	Field mustard	cytosol	36.36	28.81
Bra017614.1-P	Field mustard	nucleus	34.76	27.78

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EnsemblPlantsGene:Bra012331	EnsemblPlants:Bra012331.1	EnsemblPlants:Bra012331.1-P	InterPro:DUF1232
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0005783	GO:GO:0005886	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:M4D771	PFAM:PF06803
PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22894	PANTHER:PTHR22894:SF5	InterPro:RNF170
SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000254148C	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

AT1G22510 (E=6e-082) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA07:+:8435094..8436403

Molecular Weight (calculated)

20929.8 Da

IEP (calculated)

8.152

GRAVY (calculated)

0.304

Length

187 amino acids

Sequence
(BLAST)

001: MNQAPENEVC SICHGNFSAP CQANCSHWFC GNCIMLVWRH GSTLRPCKCP LCRRPITLLV PSEDTSRGRD DPTVSEVLRD VQTYNRVFGG QSIGLSQRIQ
101: DLPFLLRRLL REIMDPQRTL PLVIKARVYI ALILSVIYII SPIDIIPEAL FGIIGLLDDV IIALIFLLHV AALYRSVLYS RHGGSAS

Best Arabidopsis Sequence Match ( AT1G22510.1 )
(BLAST)

001: MNAPPENELC SICHGHFNAP CQSNCSHWFC GNCIMLVWRH GSTLRPCKCP LCRRPISLLV PSEETVRSRN DATVSEVLHD VETYNRVFGG QSSGLIQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI ALILSAIYII SPIDIIPEGV LGVIGLLDDL LIALICFLHV AALYRSVLYS RHGGS

Arabidopsis Description

E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:F4I1E4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.