Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96380 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 68.82 | 69.19 |
| Bra016082.1-P | Field mustard | cytosol, endoplasmic reticulum, plasma membrane | 68.82 | 69.19 |
| CDX72875 | Canola | cytosol, nucleus, plasma membrane | 68.82 | 69.19 |
| AT1G72175.1 | Thale cress | cytosol, nucleus, plasma membrane | 66.67 | 67.03 |
| VIT_18s0041g00290.t01 | Wine grape | plasma membrane | 66.67 | 66.67 |
| Solyc11g027820.1.1 | Tomato | cytosol | 13.98 | 65.0 |
| CDY12526 | Canola | cytosol, nucleus, plasma membrane | 64.52 | 64.17 |
| CDY25740 | Canola | cytosol, nucleus, plasma membrane | 64.52 | 64.17 |
| Bra012331.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 63.98 | 63.64 |
| PGSC0003DMT400068737 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 61.83 | 62.16 |
| Solyc11g027810.1.1 | Tomato | plasma membrane | 50.0 | 58.12 |
| AT1G22510.2 | Thale cress | mitochondrion | 58.6 | 53.69 |
| GSMUA_Achr7P23200_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 52.69 | 52.97 |
| GSMUA_Achr8P08140_001 | Banana | plasma membrane | 52.15 | 52.72 |
| GSMUA_Achr6P18810_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 52.15 | 52.15 |
| EER90557 | Sorghum | endoplasmic reticulum, nucleus, peroxisome | 50.0 | 48.69 |
| TraesCS4A01G352200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 50.0 | 47.45 |
| TraesCS5B01G519400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 50.0 | 47.21 |
| TraesCS5D01G518700.2 | Wheat | cytosol, nucleus, plasma membrane, plastid | 50.0 | 47.21 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 44.09 | 44.57 |
| TraesCS3B01G567600.1 | Wheat | mitochondrion | 40.32 | 36.59 |
| TraesCS3D01G511300.1 | Wheat | mitochondrion | 40.32 | 36.41 |
| HORVU3Hr1G111110.1 | Barley | plastid | 30.65 | 33.14 |
Protein Annotations
| EntrezGene:100306204 | Gene3D:3.30.40.10 | MapMan:35.2 | EMBL:ACUP02002775 | EMBL:BT090198 | UniProt:C6SYF0 |
| InterPro:DUF1232 | EnsemblPlantsGene:GLYMA_04G255000 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlants:KRH64784 |
| ProteinID:KRH64784 | ProteinID:KRH64784.1 | PFAM:PF06803 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR22894 |
| PANTHER:PTHR22894:SF5 | InterPro:RNF170 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0001B1579B | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:52163292..52164732
Molecular Weight (calculated)
20994.0 Da
IEP (calculated)
8.071
GRAVY (calculated)
0.389
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGPPANDL CSVCHGNFHI PCQANCSHWF CGNCIMLVWQ HGSVGCSCKC PLCRRAISLL VPTEESLRQQ QDPEVSQILS KIHAYNRFFG GQPTTLYQRL
101: RDLPFLLHRL LREFLHPHRS LPLLIRARVF VVMIASVIYL FSPIDIIPEG ILGVVGFLDD LLIVLICFLH VAALYRSVLY LRHGGS
101: RDLPFLLHRL LREFLHPHRS LPLLIRARVF VVMIASVIYL FSPIDIIPEG ILGVVGFLDD LLIVLICFLH VAALYRSVLY LRHGGS
001: MNSPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRHISLLV PSEDTIRDRN DATVKEVLGN LETYNRLFGG RSSSLVQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
Arabidopsis Description
E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:Q93WJ5]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.