CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012331.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	99.47	99.47
CDY12526	Canola	cytosol, nucleus, plasma membrane	98.93	98.93
CDX72875	Canola	cytosol, nucleus, plasma membrane	77.01	77.84
CDX96380	Canola	cytosol, endoplasmic reticulum, plasma membrane	77.01	77.84
Solyc11g027820.1.1	Tomato	cytosol	15.51	72.5
PGSC0003DMT400068737	Potato	endoplasmic reticulum, nucleus, plasma membrane	68.98	69.73
Solyc11g027810.1.1	Tomato	plasma membrane	56.68	66.25
AT1G22510.2	Thale cress	mitochondrion	71.12	65.52
VIT_18s0041g00290.t01	Wine grape	plasma membrane	64.17	64.52
KRH64784	Soybean	nucleus	64.17	64.52
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	54.01	54.59
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	51.34	51.61
GSMUA_Achr8P08140_001	Banana	plasma membrane	50.27	51.09
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	50.27	49.21
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	51.34	48.98
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	51.34	48.73
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	51.34	48.73
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	42.78	43.48
TraesCS3B01G567600.1	Wheat	mitochondrion	44.38	40.49
TraesCS3D01G511300.1	Wheat	mitochondrion	43.85	39.81
HORVU3Hr1G111110.1	Barley	plastid	34.76	37.79
CDX72441	Canola	cytosol, nucleus, peroxisome	35.29	29.33
CDX75389	Canola	cytosol	36.9	29.24
CDY49386	Canola	nucleus	35.29	28.7
CDX69014	Canola	cytosol	36.9	27.94

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078GH05	UniProt:A0A078GH05	EnsemblPlants:CDY25740	ProteinID:CDY25740
ProteinID:CDY25740.1	InterPro:DUF1232	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	EnsemblPlantsGene:GSBRNA2T00033119001	InterPro:IPR001841	InterPro:IPR013083
PFAM:PF06803	PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22894	PANTHER:PTHR22894:SF5
InterPro:RNF170	SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EF3787
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:

Description

BnaA07g10420DBnaA07g10420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GH05]

Coordinates

chrLK032180:-:6973..8532

Molecular Weight (calculated)

20917.8 Da

IEP (calculated)

8.152

GRAVY (calculated)

0.276

Length

187 amino acids

Sequence
(BLAST)

001: MNQAPENEVC SICHGNFSAP CQANCSHWFC GNCIMLVWRH GSTLRPCKCP LCRRPITLLV PSEDTSRGRD DPTVSEVLRD VQTYNRVFGG QSTGLSQRIQ
101: DLPFLLRRLL REIMDPQRTL PLVIKARVYI ALILSVIYII SPIDIIPEAL FGIIGLLDDV IIALIFLLHV AALYRSVLYS RHGGSAS

Best Arabidopsis Sequence Match ( AT1G22510.1 )
(BLAST)

001: MNAPPENELC SICHGHFNAP CQSNCSHWFC GNCIMLVWRH GSTLRPCKCP LCRRPISLLV PSEETVRSRN DATVSEVLHD VETYNRVFGG QSSGLIQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI ALILSAIYII SPIDIIPEGV LGVIGLLDDL LIALICFLHV AALYRSVLYS RHGGS

Arabidopsis Description

E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:F4I1E4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.