CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25740	Canola	cytosol, nucleus, plasma membrane	98.93	98.93
CDX72875	Canola	cytosol, nucleus, plasma membrane	76.47	77.3
CDX96380	Canola	cytosol, endoplasmic reticulum, plasma membrane	76.47	77.3
Solyc11g027820.1.1	Tomato	cytosol	15.51	72.5
PGSC0003DMT400068737	Potato	endoplasmic reticulum, nucleus, plasma membrane	67.91	68.65
AT1G22510.2	Thale cress	mitochondrion	70.59	65.02
Solyc11g027810.1.1	Tomato	plasma membrane	55.62	65.0
KRH64784	Soybean	nucleus	64.17	64.52
VIT_18s0041g00290.t01	Wine grape	plasma membrane	63.64	63.98
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	53.48	54.05
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	50.8	51.08
GSMUA_Achr8P08140_001	Banana	plasma membrane	49.2	50.0
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	49.73	48.69
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	50.8	48.47
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	50.8	48.22
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	50.8	48.22
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	42.25	42.93
TraesCS3B01G567600.1	Wheat	mitochondrion	43.85	40.0
TraesCS3D01G511300.1	Wheat	mitochondrion	43.32	39.32
HORVU3Hr1G111110.1	Barley	plastid	34.22	37.21
CDX72441	Canola	cytosol, nucleus, peroxisome	34.76	28.89
CDX75389	Canola	cytosol	36.36	28.81
CDY49386	Canola	nucleus	34.76	28.26
CDX69014	Canola	cytosol	36.36	27.53

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078FH93	UniProt:A0A078FH93	EnsemblPlants:CDY12526	ProteinID:CDY12526
ProteinID:CDY12526.1	InterPro:DUF1232	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	EnsemblPlantsGene:GSBRNA2T00061878001	InterPro:IPR001841	InterPro:IPR013083
PFAM:PF06803	PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22894	PANTHER:PTHR22894:SF5
InterPro:RNF170	SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EE1858
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:

Description

BnaC07g13660DBnaC07g13660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FH93]

Coordinates

chrLK032023:+:776946..779195

Molecular Weight (calculated)

20823.7 Da

IEP (calculated)

7.681

GRAVY (calculated)

0.330

Length

187 amino acids

Sequence
(BLAST)

001: MNQAPENEVC SICHGNFSAP CQANCSHWFC GNCIMLVWRH GSTLRPCKCP LCRRPITLLV PSEDTSRGRD DPTVSEVLSD VQTYNRVFGG QSTGLSQRIQ
101: DLPFLLRMLL REIMDPQRTL PLVIKARVYI ALILSVIYII SPIDIIPEAL FGIIGLLDDV IIALIFLLHV AALYRSVLYS RHGGSAS

Best Arabidopsis Sequence Match ( AT1G22510.1 )
(BLAST)

001: MNAPPENELC SICHGHFNAP CQSNCSHWFC GNCIMLVWRH GSTLRPCKCP LCRRPISLLV PSEETVRSRN DATVSEVLHD VETYNRVFGG QSSGLIQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI ALILSAIYII SPIDIIPEGV LGVIGLLDDL LIALICFLHV AALYRSVLYS RHGGS

Arabidopsis Description

E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:F4I1E4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.