Factsheet for TraesCS3B01G567600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G274800.1
TraesCS1B01G284200.1
TraesCS1D01G274600.1
TraesCS2A01G298600.1
TraesCS2B01G315100.1
TraesCS2D01G296700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33940.1	TraesCS1A01G274800.1	AT5G09800.1	21798944
AT4G33940.1	TraesCS1B01G284200.1	AT5G09800.1	21798944
AT4G33940.1	TraesCS1D01G274600.1	AT5G09800.1	21798944
AT4G33940.1	TraesCS2A01G298600.1	AT5G09800.1	21798944
AT4G33940.1	TraesCS2B01G315100.1	AT5G09800.1	21798944
AT4G33940.1	TraesCS2D01G296700.1	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G511300.1	Wheat	mitochondrion	96.59	96.12
HORVU3Hr1G111110.1	Barley	plastid	60.0	71.51
Solyc11g027820.1.1	Tomato	cytosol	9.76	50.0
Bra012331.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	40.49	44.38
CDY25740	Canola	cytosol, nucleus, plasma membrane	40.49	44.38
CDY12526	Canola	cytosol, nucleus, plasma membrane	40.0	43.85
PGSC0003DMT400068737	Potato	endoplasmic reticulum, nucleus, plasma membrane	39.02	43.24
CDX72875	Canola	cytosol, nucleus, plasma membrane	38.05	42.16
AT1G72175.1	Thale cress	cytosol, nucleus, plasma membrane	37.56	41.62
Bra016082.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	37.56	41.62
CDX96380	Canola	cytosol, endoplasmic reticulum, plasma membrane	37.56	41.62
Solyc11g027810.1.1	Tomato	plasma membrane	31.71	40.62
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	39.02	40.61
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	36.59	40.54
VIT_18s0041g00290.t01	Wine grape	plasma membrane	36.59	40.32
KRH64784	Soybean	nucleus	36.59	40.32
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	36.1	39.78
GSMUA_Achr8P08140_001	Banana	plasma membrane	33.17	36.96
AT1G22510.2	Thale cress	mitochondrion	34.15	34.48
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	30.24	33.7
Solyc01g103970.2.1	Tomato	cytosol	26.34	23.79
PGSC0003DMT400061164	Potato	cytosol, nucleus, peroxisome	25.85	23.45
CDX75389	Canola	cytosol	26.34	22.88
Bra011479.1-P	Field mustard	cytosol	26.34	22.88
Bra017614.1-P	Field mustard	nucleus	25.85	22.65
CDY49386	Canola	nucleus	25.37	22.61
CDX72441	Canola	cytosol, nucleus, peroxisome	24.39	22.22
CDX69014	Canola	cytosol	26.34	21.86
AT4G33940.1	Thale cress	cytosol	26.83	20.99
PGSC0003DMT400061161	Potato	nucleus	25.85	17.1
Solyc01g103980.2.1	Tomato	mitochondrion	25.37	16.67

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:DUF1232	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0016740	GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF00097
PFAM:PF06803	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22894	PANTHER:PTHR22894:SF5	InterPro:RNF170
SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3B01G567600	EnsemblPlants:TraesCS3B01G567600.1	InterPro:Znf_C3HC4_RING-type
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:+:799283130..799286404

Molecular Weight (calculated)

22640.8 Da

IEP (calculated)

8.287

GRAVY (calculated)

0.253

Length

205 amino acids

Sequence
(BLAST)

001: MLPEVSRRGR RPEMAPASAS ASVAPPVGAR CAVCGGVDIS VPHQANCSHW FCGHCIVGVW LQGSVLRPSN CPICRRPITL LVPSEVASLL RDEPEIAPVM
101: NRIQQYNGRF AGVPHSMIQW LLDQPFYMRR MLAEFRDTRQ EPPSFKIQVA LAATLALVYL ASPIDLFPEA FLGYRGLLDD ILVLIVAYAF ISAAYRDILV
201: ARHAT

Best Arabidopsis Sequence Match ( AT1G22510.2 )
(BLAST)

001: MRHRRTNFVR YAMATSTLLA NPIALTGSAV RSPSYLLSFL LLSNRFGIGN CIMLVWRHGS TLRPCKCPLC RRPISLLVPS EETVRSRNDA TVSEVLHDVE
101: TYNRVFGGQS SGLIQRMQDL PFLLRRLLRE MMDPQRTLPL VIRARVYIAL ILSAIYIISP IDIIPEGVLG VIGLLDDLLI ALICFLHVAA LYRSVLYSRH
201: GGS

Arabidopsis Description

E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:F4I1E4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.