Factsheet for Solyc01g103970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g005700.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33940.1	Solyc11g005700.1.1	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061164	Potato	cytosol, nucleus, peroxisome	85.46	85.84
Solyc11g027820.1.1	Tomato	cytosol	8.81	50.0
Bra017614.1-P	Field mustard	nucleus	41.85	40.6
CDX72441	Canola	cytosol, nucleus, peroxisome	40.09	40.44
CDY49386	Canola	nucleus	40.53	40.0
Bra011479.1-P	Field mustard	cytosol	40.53	38.98
CDX75389	Canola	cytosol	40.53	38.98
CDX69014	Canola	cytosol	40.53	37.25
AT4G33940.1	Thale cress	cytosol	41.41	35.88
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	25.55	31.52
Solyc11g027810.1.1	Tomato	plasma membrane	22.03	31.25
GSMUA_Achr8P08140_001	Banana	plasma membrane	25.11	30.98
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	25.11	30.81
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	25.11	30.65
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	25.55	30.37
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	25.99	29.95
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	25.99	29.95
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	25.55	29.59
Solyc01g103980.2.1	Tomato	mitochondrion	38.77	28.21
HORVU3Hr1G111110.1	Barley	plastid	21.15	27.91
TraesCS3B01G567600.1	Wheat	mitochondrion	23.79	26.34
TraesCS3D01G511300.1	Wheat	mitochondrion	23.35	25.73

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	UniProt:K4B1X2	PFAM:PF13445	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22894
PANTHER:PTHR22894:SF4	InterPro:RNF170	SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g103970.2	EnsemblPlants:Solyc01g103970.2.1
TMHMM:TMhelix	UniParc:UPI00027685FB	InterPro:Znf-RING_LisH	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:92450490..92454138

Molecular Weight (calculated)

26534.0 Da

IEP (calculated)

8.937

GRAVY (calculated)

0.111

Length

227 amino acids

Sequence
(BLAST)

001: MRIMKNPNIS SSIKDGDVKM EEEEGVKRRR ESEKPPGDDC CPICFGDFSI PCKTNCGHWF CANCILQLWY YRSTLRRCKC PICSCLISKL VPEASLLVQQ
101: EKDVVELLKK IRRYNHIYIS GAYGIFLKVL ALPLLTRRVL RALMDTLMDP DQVRLNYYLM RIFALFLSWI YWGCEFQFIP TGGLGIWRLF DICAIATVAI
201: FYIVGLYHRW VLRRRVRQLA VLPIHPD

Best Arabidopsis Sequence Match ( AT4G33940.1 )
(BLAST)

001: MSSLGSSKSL RDEMEVTTAD VFPEVNAAAV TENLDRNELV LADGVVSAEE RNIEPDNRGE RKIESESPPE DDVCPICFGS FTVPCRGNCG HWYCGNCILQ
101: YWNYAAISRP CKCPMCVRHI TKLSPEPSLQ ERQEQEVKEV LDKVRRYNRL FVGGLTGFVQ KVHELPFLVK RMVWHMMDTD VNNLYFHEVR IFAMFMSTLY
201: TAAEFNFIPT GGFRIVTVFD YAAIAMILIL RLVGIYRRRR LAQQVRHLAA AAIEPELEQR EL

Arabidopsis Description

At4g33940 [Source:UniProtKB/TrEMBL;Acc:Q501G9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.