Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P18810_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 65.22 | 64.52 |
| GSMUA_Achr7P23200_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 64.13 | 63.78 |
| Solyc11g027820.1.1 | Tomato | cytosol | 13.59 | 62.5 |
| EER90557 | Sorghum | endoplasmic reticulum, nucleus, peroxisome | 58.7 | 56.54 |
| GSMUA_Achr8P08140_001 | Banana | plasma membrane | 53.8 | 53.8 |
| TraesCS4A01G352200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 56.52 | 53.06 |
| TraesCS5D01G518700.2 | Wheat | cytosol, nucleus, plasma membrane, plastid | 56.52 | 52.79 |
| TraesCS5B01G519400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 56.52 | 52.79 |
| AT1G72175.1 | Thale cress | cytosol, nucleus, plasma membrane | 47.83 | 47.57 |
| CDX96380 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 47.28 | 47.03 |
| Bra016082.1-P | Field mustard | cytosol, endoplasmic reticulum, plasma membrane | 47.28 | 47.03 |
| CDX72875 | Canola | cytosol, nucleus, plasma membrane | 46.2 | 45.95 |
| PGSC0003DMT400068737 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 46.2 | 45.95 |
| VIT_18s0041g00290.t01 | Wine grape | plasma membrane | 46.2 | 45.7 |
| KRH64784 | Soybean | nucleus | 44.57 | 44.09 |
| CDY25740 | Canola | cytosol, nucleus, plasma membrane | 43.48 | 42.78 |
| Bra012331.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 43.48 | 42.78 |
| CDY12526 | Canola | cytosol, nucleus, plasma membrane | 42.93 | 42.25 |
| Solyc11g027810.1.1 | Tomato | plasma membrane | 34.24 | 39.38 |
| AT1G22510.2 | Thale cress | mitochondrion | 37.5 | 33.99 |
| HORVU3Hr1G111110.1 | Barley | plastid | 29.89 | 31.98 |
| TraesCS3B01G567600.1 | Wheat | mitochondrion | 33.7 | 30.24 |
| TraesCS3D01G511300.1 | Wheat | mitochondrion | 33.7 | 30.1 |
| CDX72441 | Canola | cytosol, nucleus, peroxisome | 33.7 | 27.56 |
| CDY49386 | Canola | nucleus | 34.24 | 27.39 |
| Bra017614.1-P | Field mustard | nucleus | 34.24 | 26.92 |
| Bra011479.1-P | Field mustard | cytosol | 33.7 | 26.27 |
| CDX75389 | Canola | cytosol | 33.7 | 26.27 |
| Solyc01g103970.2.1 | Tomato | cytosol | 31.52 | 25.55 |
| PGSC0003DMT400061164 | Potato | cytosol, nucleus, peroxisome | 30.98 | 25.22 |
| CDX69014 | Canola | cytosol | 33.7 | 25.1 |
| AT4G33940.1 | Thale cress | cytosol | 33.7 | 23.66 |
| Solyc01g103980.2.1 | Tomato | mitochondrion | 35.33 | 20.83 |
| PGSC0003DMT400061161 | Potato | nucleus | 34.78 | 20.65 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:DUF1232 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 |
| EnsemblPlantsGene:GSMUA_Achr11G18760_001 | EnsemblPlants:GSMUA_Achr11P18760_001 | EnsemblPlants:GSMUA_Achr11T18760_001 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:M0RTF6 |
| PFAM:PF00097 | PFAM:PF06803 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR22894 | PANTHER:PTHR22894:SF5 |
| InterPro:RNF170 | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI00029565B8 | InterPro:Znf_C3HC4_RING-type |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : |
Description
Putative RING finger protein 170 [Source:GMGC_GENE;Acc:GSMUA_Achr11G18760_001]
Coordinates
chr11:+:20069998..20075531
Molecular Weight (calculated)
20774.6 Da
IEP (calculated)
8.066
GRAVY (calculated)
0.180
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MESPPQDDTC SICLGSFTHP CQANCSHWFC GECILSVWHH GSIFQQCKCP ICRCFINLLK PTDASVQEGK DRKANQVLKT IKKYNRSFGG EPSNLMQKLQ
101: NLPFFIRRLA MVLMDPRRPL PSLFRAHITF ALSLSAMYVL SPVDLLPEDV YGVVGLLDDL LVLLVVFLHI AFVYCLVHHR HGGS
101: NLPFFIRRLA MVLMDPRRPL PSLFRAHITF ALSLSAMYVL SPVDLLPEDV YGVVGLLDDL LVLLVVFLHI AFVYCLVHHR HGGS
001: MNSPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRHISLLV PSEDTIRDRN DATVKEVLGN LETYNRLFGG RSSSLVQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
Arabidopsis Description
E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:Q93WJ5]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.