CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001913_P001	Maize	cytosol	100.0	100.0
Os04t0667800-01	Rice	cytosol	100.0	100.0
TraesCS2D01G541400.1	Wheat	cytosol	98.65	98.65
TraesCS2B01G570100.1	Wheat	cytosol	98.65	98.65
TraesCS2A01G539800.1	Wheat	cytosol	98.65	98.65
VIT_19s0015g01190.t01	Wine grape	cytosol	97.3	97.3
EES19701	Sorghum	cytosol	96.62	96.62
EES01663	Sorghum	cytosol, nucleus, peroxisome	95.95	95.95
GSMUA_Achr4P19400_001	Banana	cytosol	94.59	94.59
KRH45376	Soybean	cytosol	94.59	94.59
EER89829	Sorghum	cytosol	94.59	94.59
KXG33034	Sorghum	cytosol	92.57	93.2
KRH07669	Soybean	cytosol, nucleus, peroxisome	89.86	89.86
EER98641	Sorghum	cytosol	89.19	89.19
KXG29317	Sorghum	nucleus	86.49	86.49
KRH07671	Soybean	cytosol	54.05	82.47
KXG35379	Sorghum	cytosol	49.32	47.71
EES03421	Sorghum	cytosol	47.97	46.41
KXG37384	Sorghum	mitochondrion, nucleus	43.24	42.11
EER97436	Sorghum	plastid	52.7	41.71
EER98036	Sorghum	mitochondrion, nucleus	42.57	41.45
KXG31665	Sorghum	cytosol	41.89	34.83

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EntrezGene:8070290	UniProt:C5YA13	EnsemblPlants:EES13053	ProteinID:EES13053
ProteinID:EES13053.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR24068	PANTHER:PTHR24068:SF68	MetaCyc:PWY-7511	SMART:SM00212	EnsemblPlantsGene:SORBI_3006G257900	SUPFAM:SSF54495
unigene:Sbi.17907	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00001B15BE	RefSeq:XP_002448725.1

Description

hypothetical protein

Coordinates

chr6:-:59420396..59422685

Molecular Weight (calculated)

16507.9 Da

IEP (calculated)

8.073

GRAVY (calculated)

-0.314

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVGEDM FHWQATIMGP SDSPFAGGVF LVNIHFPPDY PFKPPKVSFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.