Factsheet for VIT_19s0015g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13053	Sorghum	cytosol	97.3	97.3
Zm00001d001913_P001	Maize	cytosol	97.3	97.3
Os04t0667800-01	Rice	cytosol	97.3	97.3
KRH45376	Soybean	cytosol	96.62	96.62
TraesCS2A01G539800.1	Wheat	cytosol	95.95	95.95
TraesCS2B01G570100.1	Wheat	cytosol	95.95	95.95
TraesCS2D01G541400.1	Wheat	cytosol	95.95	95.95
VIT_15s0046g01400.t01	Wine grape	cytosol	95.27	95.27
VIT_08s0040g00040.t01	Wine grape	cytosol	95.27	95.27
VIT_16s0050g02410.t01	Wine grape	cytosol	94.59	94.59
VIT_02s0025g01050.t01	Wine grape	cytosol	94.59	94.59
VIT_06s0004g08200.t01	Wine grape	cytosol	94.59	94.59
GSMUA_Achr4P19400_001	Banana	cytosol	92.57	92.57
KRH07669	Soybean	cytosol, nucleus, peroxisome	91.22	91.22
VIT_03s0038g02390.t01	Wine grape	cytosol	89.19	89.19
KRH07671	Soybean	cytosol	54.73	83.51
VIT_06s0004g00730.t01	Wine grape	plastid	52.7	44.32
VIT_19s0014g01460.t01	Wine grape	cytosol	45.27	43.23
VIT_08s0032g00310.t01	Wine grape	mitochondrion, nucleus	43.24	42.11
VIT_17s0000g05820.t01	Wine grape	mitochondrion, nucleus	42.57	41.45
VIT_12s0028g02220.t01	Wine grape	extracellular	47.97	38.59
VIT_01s0026g01770.t01	Wine grape	plastid	43.24	33.51
VIT_14s0108g00140.t01	Wine grape	cytosol, plastid	29.73	20.28

Protein Annotations

EntrezGene:100251531	wikigene:100251531	MapMan:19.2.2.5.2	Gene3D:3.10.110.10	UniProt:A5AI12	EMBL:AM427228
ProteinID:CAN77946	ProteinID:CAN77946.1	ProteinID:CBI39803	ProteinID:CBI39803.3	EMBL:FN596747	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	EntrezGene:LOC100251531	wikigene:LOC100251531	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR24068	PANTHER:PTHR24068:SF68	SMART:SM00212	SUPFAM:SSF54495	TIGR:TC52204	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000151EA87	ArrayExpress:VIT_19s0015g01190	EnsemblPlantsGene:VIT_19s0015g01190	EnsemblPlants:VIT_19s0015g01190.t01
RefSeq:XP_002274335	RefSeq:XP_002274335.1	RefSeq:XP_002274367	RefSeq:XP_002274367.1	RefSeq:XP_003634740	RefSeq:XP_003634740.1

Description

No Description!

Coordinates

chr19:-:9349248..9351841

Molecular Weight (calculated)

16481.8 Da

IEP (calculated)

8.073

GRAVY (calculated)

-0.344

Length

148 amino acids

Sequence
(BLAST)

001: MASKRINKEL KDLQKDPPTS CSAGPVGDDM FHWQATIMGP SDSPFAGGVF LVSIHFPPDY PFKPPKVSFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYETTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.