Factsheet for VIT_08s0040g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0046g01400.t01	Wine grape	cytosol	100.0	100.0
VIT_02s0025g01050.t01	Wine grape	cytosol	99.32	99.32
VIT_16s0050g02410.t01	Wine grape	cytosol	99.32	99.32
VIT_06s0004g08200.t01	Wine grape	cytosol	96.62	96.62
VIT_19s0015g01190.t01	Wine grape	cytosol	95.27	95.27
VIT_03s0038g02390.t01	Wine grape	cytosol	92.57	92.57
VIT_19s0014g01460.t01	Wine grape	cytosol	45.27	43.23
VIT_06s0004g00730.t01	Wine grape	plastid	51.35	43.18
VIT_08s0032g00310.t01	Wine grape	mitochondrion, nucleus	43.92	42.76
VIT_17s0000g05820.t01	Wine grape	mitochondrion, nucleus	43.24	42.11
VIT_12s0028g02220.t01	Wine grape	extracellular	49.32	39.67
VIT_01s0026g01770.t01	Wine grape	plastid	43.92	34.03
VIT_14s0108g00140.t01	Wine grape	cytosol, plastid	30.41	20.74

Protein Annotations

EntrezGene:100232965	wikigene:100232965	EntrezGene:100249853	wikigene:100249853	MapMan:19.2.2.5.2	Gene3D:3.10.110.10
UniProt:A5BM41	ProteinID:AAU04836	ProteinID:AAU04836.1	EMBL:AM464235	EMBL:AM487884	EMBL:AY684132
ProteinID:CAN77754	ProteinID:CAN77754.1	ProteinID:CAN81281	ProteinID:CAN81281.1	ProteinID:CBI32888	ProteinID:CBI32888.3
ProteinID:CBI40471	ProteinID:CBI40471.3	EMBL:FN596008	EMBL:FN596755	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135
EntrezGene:LOC100232965	wikigene:LOC100232965	EntrezGene:LOC100249853	wikigene:LOC100249853	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF68	SMART:SM00212	SUPFAM:SSF54495	TIGR:TC52482
TIGR:TC63116	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001522697	ArrayExpress:VIT_08s0040g00040
EnsemblPlantsGene:VIT_08s0040g00040	EnsemblPlants:VIT_08s0040g00040.t01	unigene:Vvi.6912	RefSeq:XP_002284197	RefSeq:XP_002284197.1	RefSeq:XP_002284203
RefSeq:XP_002284203.1	RefSeq:XP_003632627	RefSeq:XP_003632627.1	RefSeq:XP_003633968.1	RefSeq:XP_010661877.1	:

Description

No Description!

Coordinates

chr8:-:10943559..10948902

Molecular Weight (calculated)

16533.0 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.295

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP PDSPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYETTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.