Factsheet for GSMUA_Achr6P29810_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P09070_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75440.1	GSMUA_Achr3P09070_001	AT5G19080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P10780_001	Banana	cytosol	95.03	95.03
GSMUA_Achr9P25520_001	Banana	cytosol, mitochondrion, nucleus, plastid	93.79	93.79
GSMUA_Achr4P20980_001	Banana	cytosol, mitochondrion, nucleus, plastid	93.17	93.17
Os03t0681400-01	Rice	cytosol	91.93	91.93
TraesCS5D01G006000.1	Wheat	cytosol	89.44	89.44
TraesCS5B01G005100.1	Wheat	cytosol	89.44	89.44
TraesCS5A01G006200.1	Wheat	cytosol	89.44	89.44
EES17494	Sorghum	cytosol	89.44	89.44
Zm00001d041216_P001	Maize	extracellular	88.2	88.2
AT1G75440.1	Thale cress	nucleus	88.2	88.2
Os12t0636800-01	Rice	cytosol	87.58	87.58
CDY47522	Canola	nucleus	86.96	86.96
CDX73173	Canola	cytosol	86.34	86.34
Bra015843.1-P	Field mustard	cytosol	86.34	86.34
Zm00001d033374_P001	Maize	endoplasmic reticulum, extracellular, nucleus, plastid	27.33	86.27
EER91078	Sorghum	cytosol, plastid	86.96	84.85
TraesCS4A01G288800.1	Wheat	cytosol	64.6	82.54
HORVU4Hr1G003890.1	Barley	cytosol, mitochondrion	81.99	80.98
TraesCS4D01G023400.1	Wheat	cytosol, mitochondrion	81.99	80.98
HORVU0Hr1G000080.1	Barley	extracellular	36.02	77.33
TraesCS4B01G026000.2	Wheat	cytosol	81.99	75.43
Zm00001d031205_P004	Maize	cytosol	73.91	69.59
Zm00001d013546_P003	Maize	mitochondrion, plastid	84.47	64.76

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr6G29810_001	EnsemblPlants:GSMUA_Achr6P29810_001	EnsemblPlants:GSMUA_Achr6T29810_001	InterPro:IPR000608
InterPro:IPR016135	UniProt:M0TBC6	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44452
PANTHER:PTHR44452:SF1	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI000294944D	SEG:seg	:	:	:	:

Description

Probable ubiquitin-conjugating enzyme E2 16 [Source:GMGC_GENE;Acc:GSMUA_Achr6G29810_001]

Coordinates

chr6:-:29966378..29972979

Molecular Weight (calculated)

18292.7 Da

IEP (calculated)

8.008

GRAVY (calculated)

-0.475

Length

161 amino acids

Sequence
(BLAST)

001: MTSSSAPSRK SLSKIACNRL QKELAEWQVN PPAGFKHKAT DNLQRWVIEV AGAPGTLYAN ETYQLQVDFP EHYPMEAPQV IFLHPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSATMK QRPADNDHYV KNCRNGRSPK ETRWWFHDDK V

Best Arabidopsis Sequence Match ( AT1G75440.1 )
(BLAST)

001: MSSSGAPSRK TLSKIATNRL QKELVEWQMN PPTGFKHKVT DNLQRWIIEV IGAPGTLYAN DTYQLQVDFP EHYPMESPQV IFLHPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V

Arabidopsis Description

UBC16Probable ubiquitin-conjugating enzyme E2 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.