CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42990.1	EES19487	AT5G19080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033374_P001	Maize	endoplasmic reticulum, extracellular, nucleus, plastid	29.09	94.12
Os03t0681400-01	Rice	cytosol	89.7	91.93
EES17494	Sorghum	cytosol	89.09	91.3
GSMUA_Achr9P25520_001	Banana	cytosol, mitochondrion, nucleus, plastid	86.67	88.82
TraesCS4A01G288800.1	Wheat	cytosol	67.27	88.1
GSMUA_Achr4P20980_001	Banana	cytosol, mitochondrion, nucleus, plastid	85.45	87.58
GSMUA_Achr6P29810_001	Banana	cytosol	84.85	86.96
GSMUA_Achr9P10780_001	Banana	cytosol	84.85	86.96
Solyc02g084760.2.1	Tomato	plastid	84.24	86.34
PGSC0003DMT400009304	Potato	nucleus	84.24	86.34
TraesCS4D01G023400.1	Wheat	cytosol, mitochondrion	84.85	85.89
HORVU4Hr1G003890.1	Barley	cytosol, mitochondrion	84.85	85.89
AT5G42990.1	Thale cress	cytosol	83.64	85.71
KRH28745	Soybean	nucleus	82.42	84.47
Solyc04g080810.2.1	Tomato	mitochondrion, nucleus	82.42	84.47
PGSC0003DMT400009620	Potato	nucleus	82.42	84.47
KRH76710	Soybean	nucleus	82.42	84.47
AT1G45050.1	Thale cress	cytosol	81.82	83.85
Bra036332.1-P	Field mustard	cytosol, mitochondrion, nucleus	61.82	83.61
CDY12582	Canola	cytosol	79.39	81.37
CDY47951	Canola	cytosol	78.79	80.75
TraesCS4B01G026000.2	Wheat	cytosol	84.85	80.0
Bra027470.1-P	Field mustard	plastid	83.64	79.31
CDY32969	Canola	plastid	83.64	79.31
CDY25658	Canola	cytosol	80.61	78.7
Zm00001d013546_P003	Maize	mitochondrion, plastid	92.12	72.38
CDY43850	Canola	nucleus	81.21	63.51
Bra032210.1-P	Field mustard	nucleus	71.52	62.43
VIT_09s0002g07740.t01	Wine grape	cytosol	29.09	58.54
VIT_09s0002g07790.t01	Wine grape	cytosol	27.88	56.1
CDY43593	Canola	cytosol	75.76	55.56

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	EntrezGene:8054171	UniProt:C5WPM7	EnsemblPlants:EER91078	ProteinID:EER91078
ProteinID:EER91078.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0031625	GO:GO:0043161	GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179
PFscan:PS50127	PANTHER:PTHR44452	PANTHER:PTHR44452:SF3	SMART:SM00212	EnsemblPlantsGene:SORBI_3001G136900	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001A81F41	RefSeq:XP_002464080.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:10822421..10825553

Molecular Weight (calculated)

18586.0 Da

IEP (calculated)

8.335

GRAVY (calculated)

-0.452

Length

165 amino acids

Sequence
(BLAST)

001: MASPSSSSSS PSRKALSKIA CSRLQKELAE WQVSPPAGFK HRVTDNLQRW VIDVAGAPGT LYTGETYKLQ VDFPEHYPME APQVIFLHPA PMHPHIYSNG
101: HICLDILYDS WSPAMTVSSI CISILSMLSS SPAKQRPADN DRYVRNCRNG RSPKETRWWF HDDTV

Best Arabidopsis Sequence Match ( AT5G42990.1 )
(BLAST)

001: MTSSSSPSRK ALSKIACNRL QKELSEWQVN PPTGFKHRVT DNLQKWVIEV TGAPGTLYAN ETYNLQVEFP QHYPMEAPQV IFVPPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V

Arabidopsis Description

UBC18Probable ubiquitin-conjugating enzyme E2 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.