Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033374_P001 | Maize | endoplasmic reticulum, extracellular, nucleus, plastid | 36.89 | 88.24 |
| HORVU0Hr1G000080.1 | Barley | extracellular | 49.18 | 80.0 |
| CDY47951 | Canola | cytosol | 99.18 | 75.16 |
| TraesCS4A01G288800.1 | Wheat | cytosol | 75.41 | 73.02 |
| AT1G45050.1 | Thale cress | cytosol | 92.62 | 70.19 |
| TraesCS5D01G006000.1 | Wheat | cytosol | 86.89 | 65.84 |
| TraesCS5B01G005100.1 | Wheat | cytosol | 86.89 | 65.84 |
| TraesCS5A01G006200.1 | Wheat | cytosol | 86.89 | 65.84 |
| EES17494 | Sorghum | cytosol | 86.89 | 65.84 |
| Os12t0636800-01 | Rice | cytosol | 86.89 | 65.84 |
| Zm00001d041216_P001 | Maize | extracellular | 86.07 | 65.22 |
| Os03t0681400-01 | Rice | cytosol | 86.07 | 65.22 |
| Bra015843.1-P | Field mustard | cytosol | 84.43 | 63.98 |
| Bra027470.1-P | Field mustard | plastid | 90.98 | 63.79 |
| EER91078 | Sorghum | cytosol, plastid | 83.61 | 61.82 |
| HORVU4Hr1G003890.1 | Barley | cytosol, mitochondrion | 81.97 | 61.35 |
| TraesCS4D01G023400.1 | Wheat | cytosol, mitochondrion | 81.97 | 61.35 |
| Bra011680.1-P | Field mustard | nucleus | 77.05 | 58.39 |
| TraesCS4B01G026000.2 | Wheat | cytosol | 81.97 | 57.14 |
| Bra017759.1-P | Field mustard | cytosol | 74.59 | 56.52 |
| Bra032210.1-P | Field mustard | nucleus | 81.15 | 52.38 |
| Zm00001d031205_P004 | Maize | cytosol | 67.21 | 47.95 |
| Zm00001d013546_P003 | Maize | mitochondrion, plastid | 81.97 | 47.62 |
| VIT_09s0002g07740.t01 | Wine grape | cytosol | 20.49 | 30.49 |
| VIT_09s0002g07790.t01 | Wine grape | cytosol | 18.85 | 28.05 |
Protein Annotations
| EnsemblPlants:Bra036332.1 | EnsemblPlants:Bra036332.1-P | EnsemblPlantsGene:Bra036332 | Gene3D:3.10.110.10 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR44452 | PANTHER:PTHR44452:SF1 | PFAM:PF00179 | PFscan:PS50127 | ScanProsite:PS00183 |
| SMART:SM00212 | SUPFAM:SSF54495 | UniParc:UPI00025459A4 | UniProt:M4F5H6 | MapMan:35.1 | : |
Description
AT5G42990 (E=3e-045) UBC18 | UBC18 (ubiquitin-conjugating enzyme 18); small conjugating protein ligase/ ubiquitin-protein ligase
Coordinates
chrA02:+:22491195..22492757
Molecular Weight (calculated)
13728.4 Da
IEP (calculated)
8.629
GRAVY (calculated)
-0.415
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSSAPSRK ALSKIACNRW KIDVTGAPGM LYENETYQLQ VVFVPPGPLH PHIYSNGHIC LDILYDSWSP AMTVSSVCIS ILSMLSSSPA KERPADNDRY
101: VKNCKNGRSP KETRWWFHDD KV
101: VKNCKNGRSP KETRWWFHDD KV
001: MTSSSAPSRK ALSKIACNRL QKELSEWQLN PPTGFRHKVT DNLQKWTIDV TGAPGTLYAN ETYQLQVEFP EHYPMEAPQV VFVSPAPSHP HIYSNGHICL
101: DILYDSWSPA MTVNSVCISI LSMLSSSPAK QRPADNDRYV KNCKNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVNSVCISI LSMLSSSPAK QRPADNDRYV KNCKNGRSPK ETRWWFHDDK V
Arabidopsis Description
UBC15Ubiquitin-conjugating enzyme 15 [Source:UniProtKB/Swiss-Prot;Acc:P42743]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.