CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036332.1-P	Field mustard	cytosol, mitochondrion, nucleus	75.16	99.18
CDY12582	Canola	cytosol	98.14	98.14
AT1G45050.1	Thale cress	cytosol	90.68	90.68
CDY25658	Canola	cytosol	93.79	89.35
Zm00001d033374_P001	Maize	endoplasmic reticulum, extracellular, nucleus, plastid	27.95	88.24
Os03t0681400-01	Rice	cytosol	83.85	83.85
EES17494	Sorghum	cytosol	83.85	83.85
TraesCS5D01G006000.1	Wheat	cytosol	83.23	83.23
TraesCS5B01G005100.1	Wheat	cytosol	83.23	83.23
TraesCS5A01G006200.1	Wheat	cytosol	83.23	83.23
Zm00001d041216_P001	Maize	extracellular	82.61	82.61
Os12t0636800-01	Rice	cytosol	82.61	82.61
CDX73173	Canola	cytosol	82.61	82.61
CDY47522	Canola	nucleus	82.61	82.61
CDY32969	Canola	plastid	88.2	81.61
TraesCS4A01G288800.1	Wheat	cytosol	62.73	80.16
HORVU0Hr1G000080.1	Barley	extracellular	37.27	80.0
EER91078	Sorghum	cytosol, plastid	80.75	78.79
TraesCS4D01G023400.1	Wheat	cytosol, mitochondrion	78.88	77.91
HORVU4Hr1G003890.1	Barley	cytosol, mitochondrion	78.88	77.91
CDX75572	Canola	nucleus	75.78	75.78
CDX69222	Canola	nucleus	75.16	75.16
CDY64924	Canola	cytosol	73.29	73.29
TraesCS4B01G026000.2	Wheat	cytosol	78.88	72.57
CDY59697	Canola	nucleus	72.05	72.05
CDY43850	Canola	nucleus	93.79	71.56
Zm00001d031205_P004	Maize	cytosol	68.94	64.91
Zm00001d013546_P003	Maize	mitochondrion, plastid	80.12	61.43
VIT_09s0002g07740.t01	Wine grape	cytosol	31.06	60.98
CDY43593	Canola	cytosol	81.99	58.67
VIT_09s0002g07790.t01	Wine grape	cytosol	29.81	58.54

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	GO:A0A078IDG6	UniProt:A0A078IDG6	EnsemblPlants:CDY47951	ProteinID:CDY47951
ProteinID:CDY47951.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00088571001	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR44452	PANTHER:PTHR44452:SF1	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143	UniParc:UPI0004EED723	:

Description

BnaA10g28230DBnaA10g28230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDG6]

Coordinates

chrLK032746:-:103874..105624

Molecular Weight (calculated)

18353.8 Da

IEP (calculated)

8.322

GRAVY (calculated)

-0.583

Length

161 amino acids

Sequence
(BLAST)

001: MTSSSAPSRK ALSKIACNRL QKELTEWQVN PPTGFRHKVN DNLQKWKIDV TGAPGMLYEN ETYQLQVEFP VNYPMEAPQA FFVPPGPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPAK ERPADNDRYV KNCKNGRSPK ETRWWFHDDK V

Best Arabidopsis Sequence Match ( AT1G45050.1 )
(BLAST)

001: MTSSSAPSRK ALSKIACNRL QKELSEWQLN PPTGFRHKVT DNLQKWTIDV TGAPGTLYAN ETYQLQVEFP EHYPMEAPQV VFVSPAPSHP HIYSNGHICL
101: DILYDSWSPA MTVNSVCISI LSMLSSSPAK QRPADNDRYV KNCKNGRSPK ETRWWFHDDK V

Arabidopsis Description

UBC15Ubiquitin-conjugating enzyme 15 [Source:UniProtKB/Swiss-Prot;Acc:P42743]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.