Factsheet for VIT_09s0002g07790.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g02680.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42990.1	VIT_05s0020g02680.t01	AT5G19080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g07740.t01	Wine grape	cytosol	90.24	90.24
VIT_18s0001g13180.t01	Wine grape	cytosol	70.73	36.02
VIT_04s0023g02620.t01	Wine grape	nucleus	68.29	34.78
Os03t0681400-01	Rice	cytosol	63.41	32.3
AT5G42990.1	Thale cress	cytosol	60.98	31.06
AT1G45050.1	Thale cress	cytosol	60.98	31.06
CDY12582	Canola	cytosol	59.76	30.43
EES17494	Sorghum	cytosol	59.76	30.43
Zm00001d041216_P001	Maize	extracellular	58.54	29.81
TraesCS5D01G006000.1	Wheat	cytosol	58.54	29.81
CDY47951	Canola	cytosol	58.54	29.81
TraesCS5B01G005100.1	Wheat	cytosol	58.54	29.81
TraesCS5A01G006200.1	Wheat	cytosol	58.54	29.81
CDY25658	Canola	cytosol	60.98	29.59
Os12t0636800-01	Rice	cytosol	57.32	29.19
Bra027470.1-P	Field mustard	plastid	60.98	28.74
CDY32969	Canola	plastid	60.98	28.74
Zm00001d031205_P004	Maize	cytosol	59.76	28.66
EER91078	Sorghum	cytosol, plastid	56.1	27.88
HORVU4Hr1G003890.1	Barley	cytosol, mitochondrion	53.66	26.99
TraesCS4D01G023400.1	Wheat	cytosol, mitochondrion	53.66	26.99
Bra032210.1-P	Field mustard	nucleus	60.98	26.45
TraesCS4B01G026000.2	Wheat	cytosol	53.66	25.14
CDY43850	Canola	nucleus	60.98	23.7
Zm00001d013546_P003	Maize	mitochondrion, plastid	56.1	21.9
Bra036332.1-P	Field mustard	cytosol, mitochondrion, nucleus	28.05	18.85
CDY43593	Canola	cytosol	51.22	18.67
TraesCS4A01G288800.1	Wheat	cytosol	28.05	18.25
Zm00001d033374_P001	Maize	endoplasmic reticulum, extracellular, nucleus, plastid	2.44	3.92
HORVU0Hr1G000080.1	Barley	extracellular	2.44	2.67

Protein Annotations

EntrezGene:100266399	wikigene:100266399	Gene3D:3.10.110.10	MapMan:35.1	ProteinID:CCB59654	ProteinID:CCB59654.1
UniProt:F6HXI4	EMBL:FN596494	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740
GO:GO:0019538	GO:GO:0031625	GO:GO:0043161	GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135
EntrezGene:LOC100266399	wikigene:LOC100266399	PFAM:PF00179	PANTHER:PTHR44452	PANTHER:PTHR44452:SF2	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000210A798	ArrayExpress:VIT_09s0002g07790	EnsemblPlantsGene:VIT_09s0002g07790	EnsemblPlants:VIT_09s0002g07790.t01
RefSeq:XP_002271309	RefSeq:XP_002271309.1	:	:	:	:

Description

No Description!

Coordinates

chr9:-:8148239..8148510

Molecular Weight (calculated)

9446.3 Da

IEP (calculated)

7.675

GRAVY (calculated)

-0.465

Length

82 amino acids

Sequence
(BLAST)

1: MTSSPASSHT VLNKITFQKE LVECQVNLPT GSEHKVTDNL QRWVIEVNKA PRTQYANELY QLQVDFPKKY PIEALQHTLH VI

Best Arabidopsis Sequence Match ( AT1G75440.1 )
(BLAST)

001: MSSSGAPSRK TLSKIATNRL QKELVEWQMN PPTGFKHKVT DNLQRWIIEV IGAPGTLYAN DTYQLQVDFP EHYPMESPQV IFLHPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V

Arabidopsis Description

UBC16Probable ubiquitin-conjugating enzyme E2 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.