Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1B01G258900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42990.1 | TraesCS1B01G258900.1 | AT5G19080.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G003890.1 | Barley | cytosol, mitochondrion | 100.0 | 100.0 |
| TraesCS4A01G288800.1 | Wheat | cytosol | 76.69 | 99.21 |
| TraesCS4B01G026000.2 | Wheat | cytosol | 100.0 | 93.14 |
| TraesCS5D01G006000.1 | Wheat | cytosol | 87.73 | 88.82 |
| Os03t0681400-01 | Rice | cytosol | 87.73 | 88.82 |
| Zm00001d033374_P001 | Maize | endoplasmic reticulum, extracellular, nucleus, plastid | 26.99 | 86.27 |
| EER91078 | Sorghum | cytosol, plastid | 85.89 | 84.85 |
| GSMUA_Achr9P25520_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 83.44 | 84.47 |
| GSMUA_Achr4P20980_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 82.82 | 83.85 |
| GSMUA_Achr9P10780_001 | Banana | cytosol | 82.21 | 83.23 |
| Solyc02g084760.2.1 | Tomato | plastid | 82.21 | 83.23 |
| PGSC0003DMT400009304 | Potato | nucleus | 82.21 | 83.23 |
| AT5G42990.1 | Thale cress | cytosol | 80.98 | 81.99 |
| GSMUA_Achr6P29810_001 | Banana | cytosol | 80.98 | 81.99 |
| Bra036332.1-P | Field mustard | cytosol, mitochondrion, nucleus | 61.35 | 81.97 |
| KRH28745 | Soybean | nucleus | 80.37 | 81.37 |
| KRH76710 | Soybean | nucleus | 80.37 | 81.37 |
| Solyc04g080810.2.1 | Tomato | mitochondrion, nucleus | 79.75 | 80.75 |
| AT1G45050.1 | Thale cress | cytosol | 79.75 | 80.75 |
| PGSC0003DMT400009620 | Potato | nucleus | 79.75 | 80.75 |
| CDY12582 | Canola | cytosol | 78.53 | 79.5 |
| CDY47951 | Canola | cytosol | 77.91 | 78.88 |
| CDY25658 | Canola | cytosol | 80.37 | 77.51 |
| CDY32969 | Canola | plastid | 80.98 | 75.86 |
| Bra027470.1-P | Field mustard | plastid | 80.98 | 75.86 |
| Zm00001d013546_P003 | Maize | mitochondrion, plastid | 82.21 | 63.81 |
| CDY43850 | Canola | nucleus | 80.37 | 62.09 |
| Bra032210.1-P | Field mustard | nucleus | 69.94 | 60.32 |
| VIT_09s0002g07740.t01 | Wine grape | cytosol | 28.83 | 57.32 |
| CDY43593 | Canola | cytosol | 74.23 | 53.78 |
| VIT_09s0002g07790.t01 | Wine grape | cytosol | 26.99 | 53.66 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G023400.1 | EnsemblPlantsGene:TraesCS4D01G023400 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR44452 | PANTHER:PTHR44452:SF3 | PFAM:PF00179 | PFscan:PS50127 | SMART:SM00212 |
| SUPFAM:SSF54495 | TIGR:cd00195 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4D:+:10240256..10244648
Molecular Weight (calculated)
18469.9 Da
IEP (calculated)
7.501
GRAVY (calculated)
-0.473
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSASSSPS RKVLSKIACL RLQKELGEWQ ASPPGGFTYK VSDNLQRWVI EVSGAEGTLY AGETYRLQVD FPEQYPMEAP QVIFMHPAPM HPHIYSNGHI
101: CLDILYDSWS PAMTVSSVCI SILSMLSSSP AKERPSDNDR YVRNCRNGRS PKETRWWFHD DKV
101: CLDILYDSWS PAMTVSSVCI SILSMLSSSP AKERPSDNDR YVRNCRNGRS PKETRWWFHD DKV
001: MTSSSSPSRK ALSKIACNRL QKELSEWQVN PPTGFKHRVT DNLQKWVIEV TGAPGTLYAN ETYNLQVEFP QHYPMEAPQV IFVPPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
Arabidopsis Description
UBC18Probable ubiquitin-conjugating enzyme E2 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.