Factsheet for Solyc04g080810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009620	Potato	nucleus	98.76	98.76
VIT_18s0001g13180.t01	Wine grape	cytosol	94.41	94.41
GSMUA_Achr4P20980_001	Banana	cytosol, mitochondrion, nucleus, plastid	90.68	90.68
Zm00001d033374_P001	Maize	endoplasmic reticulum, extracellular, nucleus, plastid	28.57	90.2
Solyc02g084760.2.1	Tomato	plastid	90.06	90.06
Os03t0681400-01	Rice	cytosol	88.82	88.82
TraesCS5D01G006000.1	Wheat	cytosol	86.34	86.34
TraesCS5B01G005100.1	Wheat	cytosol	86.34	86.34
TraesCS5A01G006200.1	Wheat	cytosol	86.34	86.34
EES17494	Sorghum	cytosol	86.34	86.34
Bra011680.1-P	Field mustard	nucleus	85.09	85.09
Zm00001d041216_P001	Maize	extracellular	85.09	85.09
CDX75572	Canola	nucleus	85.09	85.09
Os12t0636800-01	Rice	cytosol	84.47	84.47
CDX69222	Canola	nucleus	84.47	84.47
AT4G36410.1	Thale cress	nucleus	82.61	82.61
EER91078	Sorghum	cytosol, plastid	84.47	82.42
Bra017759.1-P	Field mustard	cytosol	81.99	81.99
CDY64924	Canola	cytosol	80.75	80.75
TraesCS4A01G288800.1	Wheat	cytosol	62.73	80.16
HORVU4Hr1G003890.1	Barley	cytosol, mitochondrion	80.75	79.75
TraesCS4D01G023400.1	Wheat	cytosol, mitochondrion	80.75	79.75
CDY59697	Canola	nucleus	79.5	79.5
HORVU0Hr1G000080.1	Barley	extracellular	36.02	77.33
TraesCS4B01G026000.2	Wheat	cytosol	80.75	74.29
Zm00001d031205_P004	Maize	cytosol	71.43	67.25
Zm00001d013546_P003	Maize	mitochondrion, plastid	82.61	63.33

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	GO:GO:0000166	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009719	GO:GO:0009739	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625
GO:GO:0043161	GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4BVG0	EMBL:KY246910
PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44452	PANTHER:PTHR44452:SF4	SMART:SM00212
SUPFAM:SSF54495	EnsemblPlantsGene:Solyc04g080810.2	EnsemblPlants:Solyc04g080810.2.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0002765A8D	SEG:seg	:	:	:	:

Description

UBC16 [Source:UniProtKB/TrEMBL;Acc:K4BVG0]

Coordinates

chr4:-:64885643..64890054

Molecular Weight (calculated)

18429.1 Da

IEP (calculated)

8.332

GRAVY (calculated)

-0.424

Length

161 amino acids

Sequence
(BLAST)

001: MTSASASSRK VLSKIACNRL QKELMEWQVN PPAGFKHKVT DNLQRWIIEV NGAPGTLYAN EMYQLQVDFP EHYPMEAPQV VFIHPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTVK QRPADNDRYV KNCKNGRSPK ETRWWFHDDK V

Best Arabidopsis Sequence Match ( AT1G75440.1 )
(BLAST)

001: MSSSGAPSRK TLSKIATNRL QKELVEWQMN PPTGFKHKVT DNLQRWIIEV IGAPGTLYAN DTYQLQVDFP EHYPMESPQV IFLHPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V

Arabidopsis Description

UBC16Probable ubiquitin-conjugating enzyme E2 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.