Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75572 | Canola | nucleus | 100.0 | 100.0 |
| AT4G36410.1 | Thale cress | nucleus | 95.65 | 95.65 |
| Bra017759.1-P | Field mustard | cytosol | 95.65 | 95.65 |
| Solyc04g080810.2.1 | Tomato | mitochondrion, nucleus | 85.09 | 85.09 |
| PGSC0003DMT400009620 | Potato | nucleus | 84.47 | 84.47 |
| VIT_18s0001g13180.t01 | Wine grape | cytosol | 81.99 | 81.99 |
| GSMUA_Achr4P20980_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 80.75 | 80.75 |
| Bra015843.1-P | Field mustard | cytosol | 79.5 | 79.5 |
| Bra036332.1-P | Field mustard | cytosol, mitochondrion, nucleus | 58.39 | 77.05 |
| Bra027470.1-P | Field mustard | plastid | 79.5 | 73.56 |
| Bra032210.1-P | Field mustard | nucleus | 67.7 | 57.67 |
Protein Annotations
| Gene3D:3.10.110.10 | MapMan:35.1 | EnsemblPlantsGene:Bra011680 | EnsemblPlants:Bra011680.1 | EnsemblPlants:Bra011680.1-P | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016740 | InterPro:IPR000608 |
| InterPro:IPR016135 | UniProt:M4D5C3 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR44452 |
| PANTHER:PTHR44452:SF4 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD |
| UniParc:UPI0002546B97 | SEG:seg | : | : | : | : |
Description
AT4G36410 (E=9e-083) UBC17 | UBC17 (UBIQUITIN-CONJUGATING ENZYME 17); small conjugating protein ligase/ ubiquitin-protein ligase
Coordinates
chrA01:-:1080006..1080934
Molecular Weight (calculated)
18525.0 Da
IEP (calculated)
9.131
GRAVY (calculated)
-0.657
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSSASTRK GLTKIATNRL QKEFMEWQTN PPAGFKHRVS DNLQRWIIEV NGAPGTLYAN ETYQLQVEFP EHYPMEAPQV IFQHPAPLHP HIYSNGHICL
101: DVLYDSWSPA MRLSSICLSI LSMLSSSAVK QKPKDNDHYL KNCKNGRSPK ETRWRFHDDK V
101: DVLYDSWSPA MRLSSICLSI LSMLSSSAVK QKPKDNDHYL KNCKNGRSPK ETRWRFHDDK V
001: MTSSSESTRK GLTKIATNRL QKEFMEWQTN PPSGFKHRVS DNLQRWIIEV HGVPGTLYAN ETYQLQVEFP EHYPMEAPQV IFQHPAPLHP HIYSNGHICL
101: DVLYDSWSPA MRLSSICLSI LSMLSSSSVK QKPKDNDHYL KNCKHGRSPK ETRWRFHDDK V
101: DVLYDSWSPA MRLSSICLSI LSMLSSSSVK QKPKDNDHYL KNCKHGRSPK ETRWRFHDDK V
Arabidopsis Description
UBC17Probable ubiquitin-conjugating enzyme E2 17 [Source:UniProtKB/Swiss-Prot;Acc:O23239]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.