Factsheet for Bra017759.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64924	Canola	cytosol	98.76	98.76
CDY59697	Canola	nucleus	96.89	96.89
Bra011680.1-P	Field mustard	nucleus	95.65	95.65
AT4G36410.1	Thale cress	nucleus	93.17	93.17
Solyc04g080810.2.1	Tomato	mitochondrion, nucleus	81.99	81.99
PGSC0003DMT400009620	Potato	nucleus	81.37	81.37
VIT_18s0001g13180.t01	Wine grape	cytosol	79.5	79.5
GSMUA_Achr4P20980_001	Banana	cytosol, mitochondrion, nucleus, plastid	78.88	78.88
Bra015843.1-P	Field mustard	cytosol	77.02	77.02
Bra036332.1-P	Field mustard	cytosol, mitochondrion, nucleus	56.52	74.59
Bra027470.1-P	Field mustard	plastid	78.88	72.99
Bra032210.1-P	Field mustard	nucleus	67.08	57.14

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	EnsemblPlantsGene:Bra017759	EnsemblPlants:Bra017759.1	EnsemblPlants:Bra017759.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4DMM4	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44452
PANTHER:PTHR44452:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0002540C48	SEG:seg	:	:	:	:

Description

AT4G36410 (E=6e-081) UBC17 | UBC17 (UBIQUITIN-CONJUGATING ENZYME 17); small conjugating protein ligase/ ubiquitin-protein ligase

Coordinates

chrA03:+:30295285..30296147

Molecular Weight (calculated)

18513.0 Da

IEP (calculated)

9.414

GRAVY (calculated)

-0.726

Length

161 amino acids

Sequence
(BLAST)

001: MTTSSESTRK GLTKIATNRL QKEFMEWQTN PPAGFKHRVS DNLQRWTIEV KGAPGTLYAN ETYQLQVEFP EHYPMEAPQV IFQHPAPLHP HVYSNGHICL
101: DVLYGSWSPA MRLSSICLSI LSMLSSSAVK QRPKDNDHYL KNCKNGRSPK ETRWRFHDDK A

Best Arabidopsis Sequence Match ( AT4G36410.1 )
(BLAST)

001: MTSSSESTRK GLTKIATNRL QKEFMEWQTN PPSGFKHRVS DNLQRWIIEV HGVPGTLYAN ETYQLQVEFP EHYPMEAPQV IFQHPAPLHP HIYSNGHICL
101: DVLYDSWSPA MRLSSICLSI LSMLSSSSVK QKPKDNDHYL KNCKHGRSPK ETRWRFHDDK V

Arabidopsis Description

UBC17Probable ubiquitin-conjugating enzyme E2 17 [Source:UniProtKB/Swiss-Prot;Acc:O23239]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.