Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g080810.2.1 | Tomato | mitochondrion, nucleus | 94.41 | 94.41 |
| PGSC0003DMT400009620 | Potato | nucleus | 93.79 | 93.79 |
| VIT_04s0023g02620.t01 | Wine grape | nucleus | 93.79 | 93.79 |
| GSMUA_Achr4P20980_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 91.93 | 91.93 |
| Bra011680.1-P | Field mustard | nucleus | 81.99 | 81.99 |
| CDX75572 | Canola | nucleus | 81.99 | 81.99 |
| CDX69222 | Canola | nucleus | 81.37 | 81.37 |
| AT4G36410.1 | Thale cress | nucleus | 79.5 | 79.5 |
| Bra017759.1-P | Field mustard | cytosol | 79.5 | 79.5 |
| CDY64924 | Canola | cytosol | 79.5 | 79.5 |
| CDY59697 | Canola | nucleus | 77.64 | 77.64 |
| VIT_09s0002g07740.t01 | Wine grape | cytosol | 37.27 | 73.17 |
| VIT_09s0002g07790.t01 | Wine grape | cytosol | 36.02 | 70.73 |
Protein Annotations
| EntrezGene:100262599 | wikigene:100262599 | Gene3D:3.10.110.10 | MapMan:35.1 | UniProt:A5AEM8 | EMBL:AM424676 |
| ProteinID:CAN82081 | ProteinID:CAN82081.1 | ProteinID:CBI19762 | ProteinID:CBI19762.3 | EMBL:FN595227 | GO:GO:0000166 |
| GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009719 | GO:GO:0009739 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR000608 |
| InterPro:IPR016135 | EntrezGene:LOC100262599 | wikigene:LOC100262599 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 |
| PANTHER:PTHR44452 | PANTHER:PTHR44452:SF1 | SMART:SM00212 | SUPFAM:SSF54495 | TIGR:TC57527 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI000152399A | ArrayExpress:VIT_18s0001g13180 | EnsemblPlantsGene:VIT_18s0001g13180 | EnsemblPlants:VIT_18s0001g13180.t01 |
| unigene:Vvi.1136 | unigene:Vvi.9409 | RefSeq:XP_002280882 | RefSeq:XP_002280882.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr18:-:11241300..11245481
Molecular Weight (calculated)
18315.8 Da
IEP (calculated)
8.324
GRAVY (calculated)
-0.447
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSSAPSRK VLSKIACNRL QKELVEWQVN PPAGFKHKVT DNLQRWVIEV NGAPGTLYAN ESYQLQVDFP ENYPMEAPQV VFVPPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTVK QRPADNDRYV KNCRNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVSSICISI LSMLSSSTVK QRPADNDRYV KNCRNGRSPK ETRWWFHDDK V
001: MTSSSSPSRK ALSKIACNRL QKELSEWQVN PPTGFKHRVT DNLQKWVIEV TGAPGTLYAN ETYNLQVEFP QHYPMEAPQV IFVPPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
Arabidopsis Description
UBC18Probable ubiquitin-conjugating enzyme E2 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.