CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75572	Canola	nucleus	98.76	98.76
AT4G36410.1	Thale cress	nucleus	95.65	95.65
CDY64924	Canola	cytosol	94.41	94.41
CDY59697	Canola	nucleus	93.79	93.79
Solyc04g080810.2.1	Tomato	mitochondrion, nucleus	84.47	84.47
PGSC0003DMT400009620	Potato	nucleus	83.85	83.85
VIT_18s0001g13180.t01	Wine grape	cytosol	81.37	81.37
GSMUA_Achr4P20980_001	Banana	cytosol, mitochondrion, nucleus, plastid	80.12	80.12
CDX73173	Canola	cytosol	78.88	78.88
CDY47522	Canola	nucleus	78.88	78.88
CDY12582	Canola	cytosol	75.78	75.78
CDY47951	Canola	cytosol	75.16	75.16
CDY25658	Canola	cytosol	77.02	73.37
CDY32969	Canola	plastid	78.88	72.99
CDY43850	Canola	nucleus	77.64	59.24
CDY43593	Canola	cytosol	71.43	51.11

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	GO:A0A078BY02	EnsemblPlants:CDX69222	ProteinID:CDX69222	ProteinID:CDX69222.1
EnsemblPlantsGene:GSBRNA2T00131027001	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR44452	PANTHER:PTHR44452:SF4	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143	UniParc:UPI0004EC75D5	SEG:seg	:

Description

BnaC01g02310D

Coordinates

chrLK031789:+:3566104..3567158

Molecular Weight (calculated)

18514.0 Da

IEP (calculated)

9.131

GRAVY (calculated)

-0.657

Length

161 amino acids

Sequence
(BLAST)

001: MTTSSASTRK GLTKIATNRL QKEFMEWQTS PPAGFKHRVS DNLQRWIIEV NGAPGTLYAN ETYQLQVEFP EHYPMEAPQV IFQHPAPLHP HIYSNGHICL
101: DVLYDSWSPA MRLSSICLSI LSMLSSSSVK QKPKDNDHYL KNCKNGRSPK ETRWRFHDDK V

Best Arabidopsis Sequence Match ( AT4G36410.1 )
(BLAST)

001: MTSSSESTRK GLTKIATNRL QKEFMEWQTN PPSGFKHRVS DNLQRWIIEV HGVPGTLYAN ETYQLQVEFP EHYPMEAPQV IFQHPAPLHP HIYSNGHICL
101: DVLYDSWSPA MRLSSICLSI LSMLSSSSVK QKPKDNDHYL KNCKHGRSPK ETRWRFHDDK V

Arabidopsis Description

UBC17Probable ubiquitin-conjugating enzyme E2 17 [Source:UniProtKB/Swiss-Prot;Acc:O23239]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.