Factsheet for AT4G36410.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011680.1-P	Field mustard	nucleus	95.65	95.65
CDX69222	Canola	nucleus	95.65	95.65
CDX75572	Canola	nucleus	95.65	95.65
Bra017759.1-P	Field mustard	cytosol	93.17	93.17
CDY64924	Canola	cytosol	93.17	93.17
CDY59697	Canola	nucleus	92.55	92.55
Solyc04g080810.2.1	Tomato	mitochondrion, nucleus	82.61	82.61
PGSC0003DMT400009620	Potato	nucleus	81.99	81.99
AT1G75440.1	Thale cress	nucleus	80.75	80.75
AT5G42990.1	Thale cress	cytosol	80.12	80.12
VIT_18s0001g13180.t01	Wine grape	cytosol	79.5	79.5
GSMUA_Achr4P20980_001	Banana	cytosol, mitochondrion, nucleus, plastid	78.88	78.88
AT1G45050.1	Thale cress	cytosol	77.64	77.64

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	EntrezGene:829793	UniProt:A0A178V5B3	ProteinID:AEE86653.1	EMBL:AF028340
ArrayExpress:AT4G36410	EnsemblPlantsGene:AT4G36410	RefSeq:AT4G36410	TAIR:AT4G36410	RefSeq:AT4G36410-TAIR-G	EnsemblPlants:AT4G36410.1
TAIR:AT4G36410.1	EMBL:AY088076	Unigene:At.24042	ProteinID:CAB16814.1	ProteinID:CAB80307.1	EMBL:DQ027031
GO:GO:0000166	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009719	GO:GO:0009739
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0043161
GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135	RefSeq:NP_568004.1	UniProt:O23239	ProteinID:OAP00941.1
PFAM:PF00179	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44452	PANTHER:PTHR44452:SF4	SMART:SM00212
SUPFAM:SSF54495	Symbol:UBC17	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00000A544B
SEG:seg	:	:	:	:	:

Description

UBC17Probable ubiquitin-conjugating enzyme E2 17 [Source:UniProtKB/Swiss-Prot;Acc:O23239]

Coordinates

chr4:+:17201922..17202988

Molecular Weight (calculated)

18675.2 Da

IEP (calculated)

8.814

GRAVY (calculated)

-0.704

Length

161 amino acids

Sequence
(BLAST)

001: MTSSSESTRK GLTKIATNRL QKEFMEWQTN PPSGFKHRVS DNLQRWIIEV HGVPGTLYAN ETYQLQVEFP EHYPMEAPQV IFQHPAPLHP HIYSNGHICL
101: DVLYDSWSPA MRLSSICLSI LSMLSSSSVK QKPKDNDHYL KNCKHGRSPK ETRWRFHDDK V

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.