Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73173 | Canola | cytosol | 95.03 | 95.03 |
| CDY47522 | Canola | nucleus | 95.03 | 95.03 |
| Bra015843.1-P | Field mustard | cytosol | 94.41 | 94.41 |
| GSMUA_Achr9P10780_001 | Banana | cytosol | 90.06 | 90.06 |
| GSMUA_Achr6P29810_001 | Banana | cytosol | 88.2 | 88.2 |
| GSMUA_Achr9P25520_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 88.2 | 88.2 |
| AT5G42990.1 | Thale cress | cytosol | 87.58 | 87.58 |
| AT1G45050.1 | Thale cress | cytosol | 85.71 | 85.71 |
| AT4G36410.1 | Thale cress | nucleus | 80.75 | 80.75 |
Protein Annotations
| Gene3D:3.10.110.10 | MapMan:35.1 | EntrezGene:843880 | UniProt:A0A178WCH3 | ProteinID:AAC39325.1 | ProteinID:AAG13066.1 |
| ProteinID:AEE35720.1 | ArrayExpress:AT1G75440 | EnsemblPlantsGene:AT1G75440 | RefSeq:AT1G75440 | TAIR:AT1G75440 | RefSeq:AT1G75440-TAIR-G |
| EnsemblPlants:AT1G75440.1 | TAIR:AT1G75440.1 | EMBL:AY065459 | EMBL:AY091226 | EMBL:DQ027030 | GO:GO:0000166 |
| GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0031625 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR000608 | InterPro:IPR016135 |
| RefSeq:NP_565110.1 | ProteinID:OAP14732.1 | PFAM:PF00179 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR44452 | PANTHER:PTHR44452:SF1 |
| UniProt:Q9FWT2 | SMART:SM00212 | SUPFAM:SSF54495 | Symbol:UBC16 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI00000A3C50 | SEG:seg | : | : | : |
Description
UBC16Probable ubiquitin-conjugating enzyme E2 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWT2]
Coordinates
chr1:+:28313379..28315122
Molecular Weight (calculated)
18486.0 Da
IEP (calculated)
8.099
GRAVY (calculated)
-0.558
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSGAPSRK TLSKIATNRL QKELVEWQMN PPTGFKHKVT DNLQRWIIEV IGAPGTLYAN DTYQLQVDFP EHYPMESPQV IFLHPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.