Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75440.1 | CDX92559 | AT5G19080.1 | 21798944 |
| AT1G75440.1 | CDY13949 | AT5G19080.1 | 21798944 |
| AT1G75440.1 | CDY13950 | AT5G19080.1 | 21798944 |
| AT1G75440.1 | CDY13958 | AT5G19080.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47522 | Canola | nucleus | 98.14 | 98.14 |
| AT1G75440.1 | Thale cress | nucleus | 95.03 | 95.03 |
| GSMUA_Achr9P10780_001 | Banana | cytosol | 88.2 | 88.2 |
| GSMUA_Achr6P29810_001 | Banana | cytosol | 86.34 | 86.34 |
| GSMUA_Achr9P25520_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 86.34 | 86.34 |
| CDY12582 | Canola | cytosol | 83.23 | 83.23 |
| CDY47951 | Canola | cytosol | 82.61 | 82.61 |
| CDY32969 | Canola | plastid | 88.82 | 82.18 |
| CDY25658 | Canola | cytosol | 83.85 | 79.88 |
| CDX75572 | Canola | nucleus | 79.5 | 79.5 |
| CDX69222 | Canola | nucleus | 78.88 | 78.88 |
| CDY64924 | Canola | cytosol | 77.02 | 77.02 |
| CDY59697 | Canola | nucleus | 75.16 | 75.16 |
| CDY43850 | Canola | nucleus | 84.47 | 64.45 |
| CDY43593 | Canola | cytosol | 80.12 | 57.33 |
Protein Annotations
| EnsemblPlants:CDX73173 | EnsemblPlantsGene:GSBRNA2T00103661001 | Gene3D:3.10.110.10 | GO:A0A078CE17 | InterPro:IPR000608 | InterPro:IPR016135 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | MetaCyc:PWY-7511 | PANTHER:PTHR44452 | PANTHER:PTHR44452:SF1 |
| PFAM:PF00179 | PFscan:PS50127 | ProteinID:CDX73173 | ProteinID:CDX73173.1 | ScanProsite:PS00183 | SEG:seg |
| SMART:SM00212 | SUPFAM:SSF54495 | UniParc:UPI0004EE2C9A | UniPathway:UPA00143 | MapMan:35.1 | : |
Description
BnaC06g36210D
Coordinates
chrLK031797:+:2456836..2458848
Molecular Weight (calculated)
18456.0 Da
IEP (calculated)
7.581
GRAVY (calculated)
-0.488
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSGAPSHK ALSKIACKRL QKELVEWQMN PPTGFKHKVN DNLQRWIIEV IGAPGTLYAN ETYQLQVDFP EHYPMESPQV IFLLPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV QNCKNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV QNCKNGRSPK ETRWWFHDDK V
001: MSSSGAPSRK TLSKIATNRL QKELVEWQMN PPTGFKHKVT DNLQRWIIEV IGAPGTLYAN DTYQLQVDFP EHYPMESPQV IFLHPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
Arabidopsis Description
UBC16Probable ubiquitin-conjugating enzyme E2 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.