CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25658	Canola	cytosol	79.62	99.41
Bra032210.1-P	Field mustard	nucleus	86.73	96.83
AT1G45050.1	Thale cress	cytosol	72.04	94.41
CDY12582	Canola	cytosol	71.56	93.79
CDY47951	Canola	cytosol	71.56	93.79
EES17494	Sorghum	cytosol	66.35	86.96
Os03t0681400-01	Rice	cytosol	65.88	86.34
Zm00001d033374_P001	Maize	endoplasmic reticulum, extracellular, nucleus, plastid	20.85	86.27
Zm00001d041216_P001	Maize	extracellular	65.4	85.71
CDY47522	Canola	nucleus	65.4	85.71
TraesCS5D01G006000.1	Wheat	cytosol	64.93	85.09
TraesCS5B01G005100.1	Wheat	cytosol	64.93	85.09
TraesCS5A01G006200.1	Wheat	cytosol	64.93	85.09
CDY32969	Canola	plastid	70.14	85.06
CDX73173	Canola	cytosol	64.45	84.47
Os12t0636800-01	Rice	cytosol	64.45	84.47
TraesCS4A01G288800.1	Wheat	cytosol	49.29	82.54
EER91078	Sorghum	cytosol, plastid	63.51	81.21
HORVU4Hr1G003890.1	Barley	cytosol, mitochondrion	62.09	80.37
TraesCS4D01G023400.1	Wheat	cytosol, mitochondrion	62.09	80.37
HORVU0Hr1G000080.1	Barley	extracellular	27.96	78.67
CDX75572	Canola	nucleus	59.72	78.26
CDX69222	Canola	nucleus	59.24	77.64
CDY64924	Canola	cytosol	58.29	76.4
CDY59697	Canola	nucleus	57.35	75.16
TraesCS4B01G026000.2	Wheat	cytosol	62.09	74.86
Zm00001d031205_P004	Maize	cytosol	54.98	67.84
VIT_09s0002g07740.t01	Wine grape	cytosol	24.64	63.41
CDY43593	Canola	cytosol	67.3	63.11
Zm00001d013546_P003	Maize	mitochondrion, plastid	62.56	62.86
VIT_09s0002g07790.t01	Wine grape	cytosol	23.7	60.98

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	GO:A0A078HZ19	UniProt:A0A078HZ19	EnsemblPlants:CDY43850	ProteinID:CDY43850
ProteinID:CDY43850.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00077380001	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR44452	PANTHER:PTHR44452:SF1	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143	UniParc:UPI0004EF30A4	SEG:seg

Description

BnaA05g18620DBnaA05g18620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ19]

Coordinates

chrLK032570:-:62216..64312

Molecular Weight (calculated)

23622.2 Da

IEP (calculated)

8.582

GRAVY (calculated)

-0.428

Length

211 amino acids

Sequence
(BLAST)

001: METPDSTSKK IRFGEESVPL KKKTVKSKGG DASHTFILSF SAMTSSSAPS RKALSKIACN RLQKELTEWQ LNPPTGFRHK VTDNLQKWII DVTGAPGTLY
101: ANETYQLQVE FPVNYPMEAP QACVCLMELV IFVPPAPSHP HIYSNGHICL DILYDSWSPA MTVSSVCISI LSMLSSSPAK ERPADNDRYV KNCKNGRSPK
201: ETRWWFHDDK A

Best Arabidopsis Sequence Match ( AT1G45050.1 )
(BLAST)

001: MTSSSAPSRK ALSKIACNRL QKELSEWQLN PPTGFRHKVT DNLQKWTIDV TGAPGTLYAN ETYQLQVEFP EHYPMEAPQV VFVSPAPSHP HIYSNGHICL
101: DILYDSWSPA MTVNSVCISI LSMLSSSPAK QRPADNDRYV KNCKNGRSPK ETRWWFHDDK V

Arabidopsis Description

UBC15Ubiquitin-conjugating enzyme 15 [Source:UniProtKB/Swiss-Prot;Acc:P42743]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.