Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d038127_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42990.1 | Zm00001d038127_P001 | AT5G19080.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES17494 | Sorghum | cytosol | 77.19 | 81.99 |
| Zm00001d041216_P001 | Maize | extracellular | 76.61 | 81.37 |
| Os12t0636800-01 | Rice | cytosol | 75.44 | 80.12 |
| TraesCS5D01G006000.1 | Wheat | cytosol | 74.27 | 78.88 |
| TraesCS5B01G005100.1 | Wheat | cytosol | 74.27 | 78.88 |
| TraesCS5A01G006200.1 | Wheat | cytosol | 74.27 | 78.88 |
| GSMUA_Achr9P25520_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 70.76 | 75.16 |
| GSMUA_Achr4P20980_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 70.76 | 75.16 |
| AT5G42990.1 | Thale cress | cytosol | 69.59 | 73.91 |
| GSMUA_Achr9P10780_001 | Banana | cytosol | 69.59 | 73.91 |
| GSMUA_Achr6P29810_001 | Banana | cytosol | 69.59 | 73.91 |
| AT1G45050.1 | Thale cress | cytosol | 68.42 | 72.67 |
| KRH76710 | Soybean | nucleus | 67.84 | 72.05 |
| KRH28745 | Soybean | nucleus | 67.84 | 72.05 |
| PGSC0003DMT400009620 | Potato | nucleus | 67.25 | 71.43 |
| Solyc04g080810.2.1 | Tomato | mitochondrion, nucleus | 67.25 | 71.43 |
| Solyc02g084760.2.1 | Tomato | plastid | 67.25 | 71.43 |
| PGSC0003DMT400009304 | Potato | nucleus | 67.25 | 71.43 |
| CDY12582 | Canola | cytosol | 65.5 | 69.57 |
| CDY32969 | Canola | plastid | 70.18 | 68.97 |
| Bra027470.1-P | Field mustard | plastid | 70.18 | 68.97 |
| CDY47951 | Canola | cytosol | 64.91 | 68.94 |
| CDY25658 | Canola | cytosol | 67.84 | 68.64 |
| Bra036332.1-P | Field mustard | cytosol, mitochondrion, nucleus | 47.95 | 67.21 |
| VIT_09s0002g07740.t01 | Wine grape | cytosol | 30.41 | 63.41 |
| VIT_09s0002g07790.t01 | Wine grape | cytosol | 28.66 | 59.76 |
| Zm00001d013546_P003 | Maize | mitochondrion, plastid | 68.42 | 55.71 |
| CDY43850 | Canola | nucleus | 67.84 | 54.98 |
| Bra032210.1-P | Field mustard | nucleus | 58.48 | 52.91 |
| HORVU0Hr1G000080.1 | Barley | extracellular | 22.22 | 50.67 |
| CDY43593 | Canola | cytosol | 62.57 | 47.56 |
| Zm00001d033374_P001 | Maize | endoplasmic reticulum, extracellular, nucleus, plastid | 12.87 | 43.14 |
Protein Annotations
| EnsemblPlants:Zm00001d031205_P004 | EnsemblPlants:Zm00001d031205_T004 | EnsemblPlantsGene:Zm00001d031205 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD | ncoils:Coil | PANTHER:PTHR44452 | PANTHER:PTHR44452:SF3 | PFAM:PF00179 |
| PFscan:PS50127 | ProteinID:ONM02314.1 | SEG:seg | SMART:SM00212 | SUPFAM:SSF54495 | UniParc:UPI00084566D6 |
| UniProt:A0A1D6KGW2 | MapMan:35.1 | : | : | : | : |
Description
ubiquitin conjugating enzyme1Ubiquitin-conjugating enzyme 15
Coordinates
chr1:-:182002250..182006758
Molecular Weight (calculated)
18643.5 Da
IEP (calculated)
8.131
GRAVY (calculated)
-0.140
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSSSPSRK ALSKIACNRL QKELAEWQQN PPVGFKHKVS DNLQRWVIEV TGAAGTLYAG EAYQLQVDFP EHYPMEAPQV IFLNPAPMHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPAK RTMTAMLGTA ATGGRQRRLD GGSMTTRCND LCGIACQPSV L
101: DILYDSWSPA MTVSSVCISI LSMLSSSPAK RTMTAMLGTA ATGGRQRRLD GGSMTTRCND LCGIACQPSV L
001: MTSSSAPSRK ALSKIACNRL QKELSEWQLN PPTGFRHKVT DNLQKWTIDV TGAPGTLYAN ETYQLQVEFP EHYPMEAPQV VFVSPAPSHP HIYSNGHICL
101: GIACYLLVTV CSAYAYV
101: GIACYLLVTV CSAYAYV
Arabidopsis Description
UBC15Ubiquitin-conjugating enzyme 15 [Source:UniProtKB/Swiss-Prot;Acc:P42743]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.