Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- mitochondrion 1
- cytosol 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_05s0020g02680.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42990.1 | VIT_05s0020g02680.t01 | AT5G19080.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_09s0002g07790.t01 | Wine grape | cytosol | 90.24 | 90.24 |
| VIT_18s0001g13180.t01 | Wine grape | cytosol | 73.17 | 37.27 |
| VIT_04s0023g02620.t01 | Wine grape | nucleus | 70.73 | 36.02 |
| Os03t0681400-01 | Rice | cytosol | 67.07 | 34.16 |
| AT5G42990.1 | Thale cress | cytosol | 63.41 | 32.3 |
| EES17494 | Sorghum | cytosol | 63.41 | 32.3 |
| AT1G45050.1 | Thale cress | cytosol | 63.41 | 32.3 |
| Zm00001d041216_P001 | Maize | extracellular | 62.2 | 31.68 |
| CDY12582 | Canola | cytosol | 62.2 | 31.68 |
| TraesCS5D01G006000.1 | Wheat | cytosol | 62.2 | 31.68 |
| TraesCS5B01G005100.1 | Wheat | cytosol | 62.2 | 31.68 |
| TraesCS5A01G006200.1 | Wheat | cytosol | 62.2 | 31.68 |
| CDY47951 | Canola | cytosol | 60.98 | 31.06 |
| Os12t0636800-01 | Rice | cytosol | 60.98 | 31.06 |
| CDY25658 | Canola | cytosol | 63.41 | 30.77 |
| Zm00001d031205_P004 | Maize | cytosol | 63.41 | 30.41 |
| CDY32969 | Canola | plastid | 63.41 | 29.89 |
| Bra027470.1-P | Field mustard | plastid | 63.41 | 29.89 |
| EER91078 | Sorghum | cytosol, plastid | 58.54 | 29.09 |
| TraesCS4D01G023400.1 | Wheat | cytosol, mitochondrion | 57.32 | 28.83 |
| HORVU4Hr1G003890.1 | Barley | cytosol, mitochondrion | 57.32 | 28.83 |
| Bra032210.1-P | Field mustard | nucleus | 63.41 | 27.51 |
| TraesCS4B01G026000.2 | Wheat | cytosol | 57.32 | 26.86 |
| CDY43850 | Canola | nucleus | 63.41 | 24.64 |
| Zm00001d013546_P003 | Maize | mitochondrion, plastid | 58.54 | 22.86 |
| Bra036332.1-P | Field mustard | cytosol, mitochondrion, nucleus | 30.49 | 20.49 |
| CDY43593 | Canola | cytosol | 53.66 | 19.56 |
| TraesCS4A01G288800.1 | Wheat | cytosol | 29.27 | 19.05 |
| Zm00001d033374_P001 | Maize | endoplasmic reticulum, extracellular, nucleus, plastid | 2.44 | 3.92 |
| HORVU0Hr1G000080.1 | Barley | extracellular | 2.44 | 2.67 |
Protein Annotations
| EntrezGene:100261753 | wikigene:100261753 | Gene3D:3.10.110.10 | MapMan:35.1 | ProteinID:CCB59650 | ProteinID:CCB59650.1 |
| UniProt:F6HXI0 | EMBL:FN596494 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0031625 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR000608 | InterPro:IPR016135 |
| EntrezGene:LOC100261753 | wikigene:LOC100261753 | PFAM:PF00179 | PANTHER:PTHR44452 | PANTHER:PTHR44452:SF4 | SUPFAM:SSF54495 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0001985FFF | ArrayExpress:VIT_09s0002g07740 | EnsemblPlantsGene:VIT_09s0002g07740 | EnsemblPlants:VIT_09s0002g07740.t01 |
| RefSeq:XP_002264578 | RefSeq:XP_002264578.1 | : | : | : | : |
Description
No Description!
Coordinates
chr9:-:8051056..8051320
Molecular Weight (calculated)
9357.2 Da
IEP (calculated)
9.124
GRAVY (calculated)
-0.439
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: MTSSPASSHK VLNKIAFQKK LVECQVNPPT GSEHKVTDNL QRWVIEVNRA LGTQYANELY QLQVDFPKKY PVEALQHTLH VI
001: MSSSGAPSRK TLSKIATNRL QKELVEWQMN PPTGFKHKVT DNLQRWIIEV IGAPGTLYAN DTYQLQVDFP EHYPMESPQV IFLHPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
Arabidopsis Description
UBC16Probable ubiquitin-conjugating enzyme E2 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.