Factsheet for Bra027470.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
endoplasmic reticulum 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002208.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42990.1	Bra002208.1-P	AT5G19080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32969	Canola	plastid	100.0	100.0
AT5G42990.1	Thale cress	cytosol	87.93	95.03
Bra036332.1-P	Field mustard	cytosol, mitochondrion, nucleus	63.79	90.98
Zm00001d033374_P001	Maize	endoplasmic reticulum, extracellular, nucleus, plastid	26.44	90.2
Bra015843.1-P	Field mustard	cytosol	82.76	89.44
Os03t0681400-01	Rice	cytosol	82.76	89.44
EES17494	Sorghum	cytosol	82.18	88.82
Os12t0636800-01	Rice	cytosol	81.03	87.58
Zm00001d041216_P001	Maize	extracellular	81.03	87.58
TraesCS5D01G006000.1	Wheat	cytosol	81.03	87.58
TraesCS5B01G005100.1	Wheat	cytosol	81.03	87.58
TraesCS5A01G006200.1	Wheat	cytosol	81.03	87.58
EER91078	Sorghum	cytosol, plastid	79.31	83.64
TraesCS4A01G288800.1	Wheat	cytosol	60.34	83.33
HORVU4Hr1G003890.1	Barley	cytosol, mitochondrion	75.86	80.98
TraesCS4D01G023400.1	Wheat	cytosol, mitochondrion	75.86	80.98
HORVU0Hr1G000080.1	Barley	extracellular	34.48	80.0
Bra011680.1-P	Field mustard	nucleus	73.56	79.5
Bra017759.1-P	Field mustard	cytosol	72.99	78.88
TraesCS4B01G026000.2	Wheat	cytosol	75.86	75.43
Zm00001d031205_P004	Maize	cytosol	68.97	70.18
Bra032210.1-P	Field mustard	nucleus	74.14	68.25
Zm00001d013546_P003	Maize	mitochondrion, plastid	77.01	63.81
VIT_09s0002g07740.t01	Wine grape	cytosol	29.89	63.41
VIT_09s0002g07790.t01	Wine grape	cytosol	28.74	60.98

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	EnsemblPlantsGene:Bra027470	EnsemblPlants:Bra027470.1	EnsemblPlants:Bra027470.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	UniProt:M4EFA8	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44452	PANTHER:PTHR44452:SF1	SMART:SM00212	SUPFAM:SSF54495
TMHMM:TMhelix	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000254285C	SEG:seg

Description

AT5G42990 (E=3e-045) UBC18 | UBC18 (ubiquitin-conjugating enzyme 18); small conjugating protein ligase/ ubiquitin-protein ligase

Coordinates

chrA09:+:14084833..14086027

Molecular Weight (calculated)

19838.6 Da

IEP (calculated)

8.320

GRAVY (calculated)

-0.383

Length

174 amino acids

Sequence
(BLAST)

001: MTSSSSPSRK ALSKIACNRL QKELSEWQVN PPTGFKHKVT DNLQKWIIEV TGAPGTLYAN ETYKLQVDFP EHYPMESPQA TFLISFFGIY IFVIFVPPAP
101: LHPHIYSNGH ICLDILYDSW SPAMTVSSVC ISILSMLSSS PEKQRPADND RYVKNCKNGR SPKETRWWFH DDKA

Best Arabidopsis Sequence Match ( AT5G42990.1 )
(BLAST)

001: MTSSSSPSRK ALSKIACNRL QKELSEWQVN PPTGFKHRVT DNLQKWVIEV TGAPGTLYAN ETYNLQVEFP QHYPMEAPQV IFVPPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V

Arabidopsis Description

UBC18Probable ubiquitin-conjugating enzyme E2 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.