Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002208.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75440.1 | Bra002208.1-P | AT5G19080.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47522 | Canola | nucleus | 99.38 | 99.38 |
| AT1G75440.1 | Thale cress | nucleus | 94.41 | 94.41 |
| GSMUA_Achr9P10780_001 | Banana | cytosol | 88.2 | 88.2 |
| GSMUA_Achr6P29810_001 | Banana | cytosol | 86.34 | 86.34 |
| GSMUA_Achr9P25520_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 86.34 | 86.34 |
| Bra036332.1-P | Field mustard | cytosol, mitochondrion, nucleus | 63.98 | 84.43 |
| Bra027470.1-P | Field mustard | plastid | 89.44 | 82.76 |
| Bra011680.1-P | Field mustard | nucleus | 79.5 | 79.5 |
| Bra017759.1-P | Field mustard | cytosol | 77.02 | 77.02 |
| Bra032210.1-P | Field mustard | nucleus | 74.53 | 63.49 |
Protein Annotations
| Gene3D:3.10.110.10 | MapMan:35.1 | EnsemblPlantsGene:Bra015843 | EnsemblPlants:Bra015843.1 | EnsemblPlants:Bra015843.1-P | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016740 | InterPro:IPR000608 |
| InterPro:IPR016135 | UniProt:M4DH66 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR44452 |
| PANTHER:PTHR44452:SF1 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD |
| UniParc:UPI0002541F79 | SEG:seg | : | : | : | : |
Description
AT1G75440 (E=2e-081) UBC16 | UBC16 (ubiquitin-conjugating enzyme 16); small conjugating protein ligase/ ubiquitin-protein ligase
Coordinates
chrA07:+:20556462..20558099
Molecular Weight (calculated)
18471.1 Da
IEP (calculated)
7.581
GRAVY (calculated)
-0.466
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSGAPFHK ALSKIACKRL QKELVEWQMN PPTGFKHKVT DNLQRWIIEV IGAPGTLYAN ETYQLQVDFP EHYPMESPQV IFLPPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV QNCKNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV QNCKNGRSPK ETRWWFHDDK V
001: MSSSGAPSRK TLSKIATNRL QKELVEWQMN PPTGFKHKVT DNLQRWIIEV IGAPGTLYAN DTYQLQVDFP EHYPMESPQV IFLHPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
Arabidopsis Description
UBC16Probable ubiquitin-conjugating enzyme E2 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.