Factsheet for GSMUA_Achr9P25520_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P09070_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75440.1	GSMUA_Achr3P09070_001	AT5G19080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P10780_001	Banana	cytosol	93.79	93.79
GSMUA_Achr6P29810_001	Banana	cytosol	93.79	93.79
Os03t0681400-01	Rice	cytosol	92.55	92.55
GSMUA_Achr4P20980_001	Banana	cytosol, mitochondrion, nucleus, plastid	91.93	91.93
TraesCS5D01G006000.1	Wheat	cytosol	91.3	91.3
TraesCS5B01G005100.1	Wheat	cytosol	91.3	91.3
TraesCS5A01G006200.1	Wheat	cytosol	91.3	91.3
Zm00001d041216_P001	Maize	extracellular	90.68	90.68
EES17494	Sorghum	cytosol	90.68	90.68
Os12t0636800-01	Rice	cytosol	90.06	90.06
Zm00001d033374_P001	Maize	endoplasmic reticulum, extracellular, nucleus, plastid	27.95	88.24
AT1G75440.1	Thale cress	nucleus	88.2	88.2
CDY47522	Canola	nucleus	86.96	86.96
EER91078	Sorghum	cytosol, plastid	88.82	86.67
CDX73173	Canola	cytosol	86.34	86.34
Bra015843.1-P	Field mustard	cytosol	86.34	86.34
TraesCS4A01G288800.1	Wheat	cytosol	65.84	84.13
HORVU4Hr1G003890.1	Barley	cytosol, mitochondrion	84.47	83.44
TraesCS4D01G023400.1	Wheat	cytosol, mitochondrion	84.47	83.44
HORVU0Hr1G000080.1	Barley	extracellular	37.27	80.0
TraesCS4B01G026000.2	Wheat	cytosol	84.47	77.71
Zm00001d031205_P004	Maize	cytosol	75.16	70.76
Zm00001d013546_P003	Maize	mitochondrion, plastid	85.09	65.24

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr9G25520_001	EnsemblPlants:GSMUA_Achr9P25520_001	EnsemblPlants:GSMUA_Achr9T25520_001	InterPro:IPR000608
InterPro:IPR016135	UniProt:M0U3F9	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44452
PANTHER:PTHR44452:SF1	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0002949C0C	SEG:seg	:	:	:	:

Description

Probable ubiquitin-conjugating enzyme E2 16 [Source:GMGC_GENE;Acc:GSMUA_Achr9G25520_001]

Coordinates

chr9:+:30001982..30005764

Molecular Weight (calculated)

18252.7 Da

IEP (calculated)

8.332

GRAVY (calculated)

-0.433

Length

161 amino acids

Sequence
(BLAST)

001: MTSSSGPSRK SLSKIACNRL QKELAEWQVS PPAGFKHKVT DNLQRWVIEV VGAPGTLYAN ETYQLQVDFP EHYPMEAPQV IFLHPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSAVK QRPADNDRYV KNCRNGKSPK ETRWWFHDDK V

Best Arabidopsis Sequence Match ( AT1G75440.1 )
(BLAST)

001: MSSSGAPSRK TLSKIATNRL QKELVEWQMN PPTGFKHKVT DNLQRWIIEV IGAPGTLYAN DTYQLQVDFP EHYPMESPQV IFLHPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V

Arabidopsis Description

UBC16Probable ubiquitin-conjugating enzyme E2 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.