Factsheet for Zm00001d033374_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, extracellular, nucleus

Predictor Summary:

endoplasmic reticulum 1
plastid 2
extracellular 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, nucleus, plastid
Any Predictor:	endoplasmic reticulum, nucleus, plastid
MultiLoc:	endoplasmic reticulum
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038127_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42990.1	Zm00001d038127_P001	AT5G19080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036332.1-P	Field mustard	cytosol, mitochondrion, nucleus	88.24	36.89
TraesCS4A01G288800.1	Wheat	cytosol	86.27	34.92
EER91078	Sorghum	cytosol, plastid	94.12	29.09
AT5G42990.1	Thale cress	cytosol	90.2	28.57
Zm00001d041216_P001	Maize	extracellular	90.2	28.57
Solyc04g080810.2.1	Tomato	mitochondrion, nucleus	90.2	28.57
Solyc02g084760.2.1	Tomato	plastid	90.2	28.57
PGSC0003DMT400009620	Potato	nucleus	90.2	28.57
PGSC0003DMT400009304	Potato	nucleus	90.2	28.57
Os03t0681400-01	Rice	cytosol	90.2	28.57
KRH76710	Soybean	nucleus	90.2	28.57
KRH28745	Soybean	nucleus	90.2	28.57
GSMUA_Achr9P10780_001	Banana	cytosol	90.2	28.57
CDY12582	Canola	cytosol	88.24	27.95
AT1G45050.1	Thale cress	cytosol	88.24	27.95
CDY47951	Canola	cytosol	88.24	27.95
GSMUA_Achr9P25520_001	Banana	cytosol, mitochondrion, nucleus, plastid	88.24	27.95
GSMUA_Achr6P29810_001	Banana	cytosol	86.27	27.33
GSMUA_Achr4P20980_001	Banana	cytosol, mitochondrion, nucleus, plastid	86.27	27.33
HORVU4Hr1G003890.1	Barley	cytosol, mitochondrion	86.27	26.99
TraesCS4D01G023400.1	Wheat	cytosol, mitochondrion	86.27	26.99
CDY32969	Canola	plastid	90.2	26.44
Bra027470.1-P	Field mustard	plastid	90.2	26.44
CDY25658	Canola	cytosol	86.27	26.04
TraesCS4B01G026000.2	Wheat	cytosol	86.27	25.14
Bra032210.1-P	Field mustard	nucleus	86.27	23.28
Zm00001d013546_P003	Maize	mitochondrion, plastid	92.16	22.38
CDY43850	Canola	nucleus	86.27	20.85
CDY43593	Canola	cytosol	90.2	20.44
Zm00001d031205_P004	Maize	cytosol	43.14	12.87
VIT_09s0002g07740.t01	Wine grape	cytosol	3.92	2.44
VIT_09s0002g07790.t01	Wine grape	cytosol	3.92	2.44

Protein Annotations

EnsemblPlants:Zm00001d033374_P001	EnsemblPlants:Zm00001d033374_T001	EnsemblPlantsGene:Zm00001d033374	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44452	PANTHER:PTHR44452:SF1	PFAM:PF00179	ProteinID:ONM07475.1
SEG:seg	UniParc:UPI0008425B0C	UniProt:A0A1D6KYI9	MapMan:35.2	:	:

Description

Ubiquitin-conjugating enzyme 15

Coordinates

chr1:+:260971128..260971563

Molecular Weight (calculated)

5944.0 Da

IEP (calculated)

8.789

GRAVY (calculated)

-0.825

Length

51 amino acids

Sequence
(BLAST)

1: MTVSSICISI LSMLSSSPEK QRPADNDRYV KNCRNGRSPK ETRWWFHDDT V

Best Arabidopsis Sequence Match ( AT5G42990.1 )
(BLAST)

001: MTSSSSPSRK ALSKIACNRL QKELSEWQVN PPTGFKHRVT DNLQKWVIEV TGAPGTLYAN ETYNLQVEFP QHYPMEAPQV IFVPPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V

Arabidopsis Description

UBC18Probable ubiquitin-conjugating enzyme E2 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.