Factsheet for Solyc02g084760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009304	Potato	nucleus	99.38	99.38
GSMUA_Achr4P20980_001	Banana	cytosol, mitochondrion, nucleus, plastid	91.3	91.3
Zm00001d033374_P001	Maize	endoplasmic reticulum, extracellular, nucleus, plastid	28.57	90.2
Solyc04g080810.2.1	Tomato	mitochondrion, nucleus	90.06	90.06
Os03t0681400-01	Rice	cytosol	88.2	88.2
EES17494	Sorghum	cytosol	86.96	86.96
TraesCS5D01G006000.1	Wheat	cytosol	86.96	86.96
TraesCS5B01G005100.1	Wheat	cytosol	86.96	86.96
TraesCS5A01G006200.1	Wheat	cytosol	86.96	86.96
Zm00001d041216_P001	Maize	extracellular	86.34	86.34
Os12t0636800-01	Rice	cytosol	85.71	85.71
EER91078	Sorghum	cytosol, plastid	86.34	84.24
TraesCS4A01G288800.1	Wheat	cytosol	65.22	83.33
TraesCS4D01G023400.1	Wheat	cytosol, mitochondrion	83.23	82.21
HORVU4Hr1G003890.1	Barley	cytosol, mitochondrion	83.23	82.21
TraesCS4B01G026000.2	Wheat	cytosol	83.23	76.57
HORVU0Hr1G000080.1	Barley	extracellular	35.4	76.0
Zm00001d031205_P004	Maize	cytosol	71.43	67.25
Zm00001d013546_P003	Maize	mitochondrion, plastid	83.85	64.29

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	GO:GO:0000166	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0043161	GO:GO:0061630
InterPro:IPR000608	InterPro:IPR016135	UniProt:K4BAZ1	EMBL:KY246911	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR44452	PANTHER:PTHR44452:SF1	SMART:SM00212	SUPFAM:SSF54495	EnsemblPlantsGene:Solyc02g084760.2
EnsemblPlants:Solyc02g084760.2.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002768C46	SEG:seg

Description

UBC17 [Source:UniProtKB/TrEMBL;Acc:K4BAZ1]

Coordinates

chr2:+:47861745..47866351

Molecular Weight (calculated)

18344.8 Da

IEP (calculated)

7.545

GRAVY (calculated)

-0.451

Length

161 amino acids

Sequence
(BLAST)

001: MSASSASSRK TLSKIACNRL QKELAEWQVN PPAGFKHKVT DNLQRWVIEV IGAPGTLYAD ETYNLQVDFP EHYPMEAPQV IFVPPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTVK QRPEDNDRYV KNCRNGRSPK ETRWWFHDDK V

Best Arabidopsis Sequence Match ( AT5G42990.1 )
(BLAST)

001: MTSSSSPSRK ALSKIACNRL QKELSEWQVN PPTGFKHRVT DNLQKWVIEV TGAPGTLYAN ETYNLQVEFP QHYPMEAPQV IFVPPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V

Arabidopsis Description

UBC18Probable ubiquitin-conjugating enzyme E2 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.