Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os05t0397650-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42990.1 | Os05t0397650-00 | AT5G19080.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0636800-01 | Rice | cytosol | 95.03 | 95.03 |
| GSMUA_Achr9P25520_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 92.55 | 92.55 |
| GSMUA_Achr9P10780_001 | Banana | cytosol | 91.93 | 91.93 |
| GSMUA_Achr6P29810_001 | Banana | cytosol | 91.93 | 91.93 |
| GSMUA_Achr4P20980_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 91.93 | 91.93 |
| Zm00001d033374_P001 | Maize | endoplasmic reticulum, extracellular, nucleus, plastid | 28.57 | 90.2 |
| EER91078 | Sorghum | cytosol, plastid | 91.93 | 89.7 |
| TraesCS4A01G288800.1 | Wheat | cytosol | 70.19 | 89.68 |
| Solyc04g080810.2.1 | Tomato | mitochondrion, nucleus | 88.82 | 88.82 |
| PGSC0003DMT400009620 | Potato | nucleus | 88.82 | 88.82 |
| AT5G42990.1 | Thale cress | cytosol | 88.82 | 88.82 |
| KRH76710 | Soybean | nucleus | 88.82 | 88.82 |
| KRH28745 | Soybean | nucleus | 88.82 | 88.82 |
| Solyc02g084760.2.1 | Tomato | plastid | 88.2 | 88.2 |
| PGSC0003DMT400009304 | Potato | nucleus | 88.2 | 88.2 |
| TraesCS4D01G023400.1 | Wheat | cytosol, mitochondrion | 88.82 | 87.73 |
| HORVU4Hr1G003890.1 | Barley | cytosol, mitochondrion | 88.82 | 87.73 |
| AT1G45050.1 | Thale cress | cytosol | 87.58 | 87.58 |
| Bra036332.1-P | Field mustard | cytosol, mitochondrion, nucleus | 65.22 | 86.07 |
| CDY12582 | Canola | cytosol | 84.47 | 84.47 |
| CDY47951 | Canola | cytosol | 83.85 | 83.85 |
| Bra027470.1-P | Field mustard | plastid | 89.44 | 82.76 |
| CDY32969 | Canola | plastid | 89.44 | 82.76 |
| CDY25658 | Canola | cytosol | 86.34 | 82.25 |
| TraesCS4B01G026000.2 | Wheat | cytosol | 88.82 | 81.71 |
| Zm00001d013546_P003 | Maize | mitochondrion, plastid | 88.82 | 68.1 |
| VIT_09s0002g07740.t01 | Wine grape | cytosol | 34.16 | 67.07 |
| CDY43850 | Canola | nucleus | 86.34 | 65.88 |
| Bra032210.1-P | Field mustard | nucleus | 76.4 | 65.08 |
| VIT_09s0002g07790.t01 | Wine grape | cytosol | 32.3 | 63.41 |
| CDY43593 | Canola | cytosol | 81.37 | 58.22 |
Protein Annotations
| Gene3D:3.10.110.10 | MapMan:35.1 | EntrezGene:4333728 | ProteinID:AAK00965.2 | ProteinID:ABF98217.1 | EMBL:AK103809 |
| ProteinID:BAF12820.1 | ProteinID:BAS85764.1 | ProteinID:EEE59698.1 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR000608 |
| InterPro:IPR016135 | EnsemblPlantsGene:Os03g0681400 | EnsemblPlants:Os03t0681400-01 | PFAM:PF00179 | PFscan:PS50127 | PANTHER:PTHR44452 |
| PANTHER:PTHR44452:SF3 | UniProt:Q9AYE3 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD |
| UniParc:UPI00004B24C2 | RefSeq:XP_015633199.1 | SEG:seg | : | : | : |
Description
UBIQUITIN-CONJUGATING ENZYME 25Similar to Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19) (Ubiquitin- conjugating enzyme 15) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (PM42). (Os03t0681400-01)
Coordinates
chr3:-:27111495..27116436
Molecular Weight (calculated)
18298.7 Da
IEP (calculated)
8.334
GRAVY (calculated)
-0.467
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSSSPSRK VLSKIACNRL QKELAEWQVN PPSGFKHKVT DNLQRWVIEV AGAAGTLYAG ETYQLQVDFP EHYPMEAPQV IFLHPAPMHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPAK QRPADNDRYV RNCRNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVSSVCISI LSMLSSSPAK QRPADNDRYV RNCRNGRSPK ETRWWFHDDK V
001: MTSSSSPSRK ALSKIACNRL QKELSEWQVN PPTGFKHRVT DNLQKWVIEV TGAPGTLYAN ETYNLQVEFP QHYPMEAPQV IFVPPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
Arabidopsis Description
UBC18Probable ubiquitin-conjugating enzyme E2 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.