CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
endoplasmic reticulum 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92559
CDY13949
CDY13950
CDY13958

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42990.1	CDX92559	AT5G19080.1	21798944
AT5G42990.1	CDY13949	AT5G19080.1	21798944
AT5G42990.1	CDY13950	AT5G19080.1	21798944
AT5G42990.1	CDY13958	AT5G19080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027470.1-P	Field mustard	plastid	100.0	100.0
AT5G42990.1	Thale cress	cytosol	87.93	95.03
Zm00001d033374_P001	Maize	endoplasmic reticulum, extracellular, nucleus, plastid	26.44	90.2
CDY47522	Canola	nucleus	83.33	90.06
Os03t0681400-01	Rice	cytosol	82.76	89.44
CDX73173	Canola	cytosol	82.18	88.82
EES17494	Sorghum	cytosol	82.18	88.82
CDY12582	Canola	cytosol	81.61	88.2
CDY47951	Canola	cytosol	81.61	88.2
Zm00001d041216_P001	Maize	extracellular	81.03	87.58
TraesCS5D01G006000.1	Wheat	cytosol	81.03	87.58
TraesCS5B01G005100.1	Wheat	cytosol	81.03	87.58
TraesCS5A01G006200.1	Wheat	cytosol	81.03	87.58
Os12t0636800-01	Rice	cytosol	81.03	87.58
CDY25658	Canola	cytosol	84.48	86.98
EER91078	Sorghum	cytosol, plastid	79.31	83.64
TraesCS4A01G288800.1	Wheat	cytosol	60.34	83.33
HORVU4Hr1G003890.1	Barley	cytosol, mitochondrion	75.86	80.98
TraesCS4D01G023400.1	Wheat	cytosol, mitochondrion	75.86	80.98
HORVU0Hr1G000080.1	Barley	extracellular	34.48	80.0
CDX75572	Canola	nucleus	73.56	79.5
CDX69222	Canola	nucleus	72.99	78.88
CDY64924	Canola	cytosol	72.41	78.26
CDY59697	Canola	nucleus	71.26	77.02
TraesCS4B01G026000.2	Wheat	cytosol	75.86	75.43
Zm00001d031205_P004	Maize	cytosol	68.97	70.18
CDY43850	Canola	nucleus	85.06	70.14
CDY43593	Canola	cytosol	83.91	64.89
Zm00001d013546_P003	Maize	mitochondrion, plastid	77.01	63.81
VIT_09s0002g07740.t01	Wine grape	cytosol	29.89	63.41
VIT_09s0002g07790.t01	Wine grape	cytosol	28.74	60.98

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	GO:A0A078H642	UniProt:A0A078H642	EnsemblPlants:CDY32969	ProteinID:CDY32969
ProteinID:CDY32969.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00053183001	InterPro:IPR000608
InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44452	PANTHER:PTHR44452:SF1
MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495	TMHMM:TMhelix	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143	UniParc:UPI000254285C	SEG:seg	:	:

Description

BnaA09g16240DBnaA09g16240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H642]

Coordinates

chrLK032303:+:418558..420126

Molecular Weight (calculated)

19838.6 Da

IEP (calculated)

8.320

GRAVY (calculated)

-0.383

Length

174 amino acids

Sequence
(BLAST)

001: MTSSSSPSRK ALSKIACNRL QKELSEWQVN PPTGFKHKVT DNLQKWIIEV TGAPGTLYAN ETYKLQVDFP EHYPMESPQA TFLISFFGIY IFVIFVPPAP
101: LHPHIYSNGH ICLDILYDSW SPAMTVSSVC ISILSMLSSS PEKQRPADND RYVKNCKNGR SPKETRWWFH DDKA

Best Arabidopsis Sequence Match ( AT5G42990.1 )
(BLAST)

001: MTSSSSPSRK ALSKIACNRL QKELSEWQVN PPTGFKHRVT DNLQKWVIEV TGAPGTLYAN ETYNLQVEFP QHYPMEAPQV IFVPPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V

Arabidopsis Description

UBC18Probable ubiquitin-conjugating enzyme E2 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.