Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1B01G258900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42990.1 | TraesCS1B01G258900.1 | AT5G19080.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G023400.1 | Wheat | cytosol, mitochondrion | 93.14 | 100.0 |
| HORVU4Hr1G003890.1 | Barley | cytosol, mitochondrion | 93.14 | 100.0 |
| TraesCS4A01G288800.1 | Wheat | cytosol | 71.43 | 99.21 |
| TraesCS5B01G005100.1 | Wheat | cytosol | 81.71 | 88.82 |
| Os03t0681400-01 | Rice | cytosol | 81.71 | 88.82 |
| Zm00001d033374_P001 | Maize | endoplasmic reticulum, extracellular, nucleus, plastid | 25.14 | 86.27 |
| EER91078 | Sorghum | cytosol, plastid | 80.0 | 84.85 |
| GSMUA_Achr9P25520_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 77.71 | 84.47 |
| GSMUA_Achr4P20980_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 77.14 | 83.85 |
| GSMUA_Achr9P10780_001 | Banana | cytosol | 76.57 | 83.23 |
| Solyc02g084760.2.1 | Tomato | plastid | 76.57 | 83.23 |
| PGSC0003DMT400009304 | Potato | nucleus | 76.57 | 83.23 |
| AT5G42990.1 | Thale cress | cytosol | 75.43 | 81.99 |
| GSMUA_Achr6P29810_001 | Banana | cytosol | 75.43 | 81.99 |
| Bra036332.1-P | Field mustard | cytosol, mitochondrion, nucleus | 57.14 | 81.97 |
| KRH28745 | Soybean | nucleus | 74.86 | 81.37 |
| KRH76710 | Soybean | nucleus | 74.86 | 81.37 |
| Solyc04g080810.2.1 | Tomato | mitochondrion, nucleus | 74.29 | 80.75 |
| AT1G45050.1 | Thale cress | cytosol | 74.29 | 80.75 |
| PGSC0003DMT400009620 | Potato | nucleus | 74.29 | 80.75 |
| CDY12582 | Canola | cytosol | 73.14 | 79.5 |
| CDY47951 | Canola | cytosol | 72.57 | 78.88 |
| CDY25658 | Canola | cytosol | 74.86 | 77.51 |
| CDY32969 | Canola | plastid | 75.43 | 75.86 |
| Bra027470.1-P | Field mustard | plastid | 75.43 | 75.86 |
| Zm00001d013546_P003 | Maize | mitochondrion, plastid | 77.14 | 64.29 |
| CDY43850 | Canola | nucleus | 74.86 | 62.09 |
| Bra032210.1-P | Field mustard | nucleus | 65.14 | 60.32 |
| VIT_09s0002g07740.t01 | Wine grape | cytosol | 26.86 | 57.32 |
| CDY43593 | Canola | cytosol | 69.14 | 53.78 |
| VIT_09s0002g07790.t01 | Wine grape | cytosol | 25.14 | 53.66 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G026000.2 | EnsemblPlantsGene:TraesCS4B01G026000 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR44452 | PANTHER:PTHR44452:SF3 | PFAM:PF00179 | PFscan:PS50127 | SMART:SM00212 |
| SUPFAM:SSF54495 | TIGR:cd00195 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:19724983..19728547
Molecular Weight (calculated)
19992.5 Da
IEP (calculated)
7.579
GRAVY (calculated)
-0.626
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSASSSPS RKVLSKIACL RLQKELGEWQ ASPPGGFTYK VSDNLQRRYE NHDGWHGNRW VIEVSGAEGT LYAGETYRLQ VDFPEQYPME APQVIFMHPA
101: PMHPHIYSNG HICLDILYDS WSPAMTVSSV CISILSMLSS SPAKERPSDN DRYVRNCRNG RSPKETRWWF HDDKV
101: PMHPHIYSNG HICLDILYDS WSPAMTVSSV CISILSMLSS SPAKERPSDN DRYVRNCRNG RSPKETRWWF HDDKV
001: MTSSSAPSRK ALSKIACNRL QKELSEWQLN PPTGFRHKVT DNLQKWTIDV TGAPGTLYAN ETYQLQVEFP EHYPMEAPQV VFVSPAPSHP HIYSNGHICL
101: DILYDSWSPA MTVNSVCISI LSMLSSSPAK QRPADNDRYV KNCKNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVNSVCISI LSMLSSSPAK QRPADNDRYV KNCKNGRSPK ETRWWFHDDK V
Arabidopsis Description
UBC15Ubiquitin-conjugating enzyme 15 [Source:UniProtKB/Swiss-Prot;Acc:P42743]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.