Factsheet for TraesCS5B01G005100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G258900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42990.1	TraesCS1B01G258900.1	AT5G19080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G006000.1	Wheat	cytosol	100.0	100.0
TraesCS5A01G006200.1	Wheat	cytosol	100.0	100.0
Os12t0636800-01	Rice	cytosol	95.65	95.65
EES17494	Sorghum	cytosol	95.65	95.65
Zm00001d041216_P001	Maize	extracellular	95.03	95.03
GSMUA_Achr9P25520_001	Banana	cytosol, mitochondrion, nucleus, plastid	91.3	91.3
GSMUA_Achr4P20980_001	Banana	cytosol, mitochondrion, nucleus, plastid	90.68	90.68
GSMUA_Achr9P10780_001	Banana	cytosol	90.06	90.06
GSMUA_Achr6P29810_001	Banana	cytosol	89.44	89.44
AT5G42990.1	Thale cress	cytosol	86.96	86.96
Solyc02g084760.2.1	Tomato	plastid	86.96	86.96
PGSC0003DMT400009304	Potato	nucleus	86.96	86.96
Bra036332.1-P	Field mustard	cytosol, mitochondrion, nucleus	65.84	86.89
KRH76710	Soybean	nucleus	86.34	86.34
Solyc04g080810.2.1	Tomato	mitochondrion, nucleus	86.34	86.34
PGSC0003DMT400009620	Potato	nucleus	86.34	86.34
KRH28745	Soybean	nucleus	86.34	86.34
AT1G45050.1	Thale cress	cytosol	86.34	86.34
HORVU0Hr1G000080.1	Barley	extracellular	39.75	85.33
CDY12582	Canola	cytosol	83.85	83.85
CDY47951	Canola	cytosol	83.23	83.23
TraesCS4B01G026000.2	Wheat	cytosol	88.82	81.71
CDY25658	Canola	cytosol	85.09	81.07
Bra027470.1-P	Field mustard	plastid	87.58	81.03
CDY32969	Canola	plastid	87.58	81.03
Zm00001d031205_P004	Maize	cytosol	78.88	74.27
CDY43850	Canola	nucleus	85.09	64.93
Bra032210.1-P	Field mustard	nucleus	75.16	64.02
VIT_09s0002g07740.t01	Wine grape	cytosol	31.68	62.2
VIT_09s0002g07790.t01	Wine grape	cytosol	29.81	58.54
CDY43593	Canola	cytosol	79.5	56.89

Protein Annotations

EnsemblPlants:TraesCS5B01G005100.1	EnsemblPlantsGene:TraesCS5B01G005100	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44452	PANTHER:PTHR44452:SF3	PFAM:PF00179	PFscan:PS50127	SMART:SM00212
SUPFAM:SSF54495	TIGR:cd00195	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5B:+:6650171..6654128

Molecular Weight (calculated)

18244.6 Da

IEP (calculated)

7.970

GRAVY (calculated)

-0.483

Length

161 amino acids

Sequence
(BLAST)

001: MTSSSTPSRK ALSKIACNRL QKELAEWQVG PPAGFKYKVS DNLQRWVIEV GGAEGTLYAG ETYQLQVDFP EHYPMEAPQV IFLNPAPMHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPAK QRPADNDRYV RNCRNGRSPK ETRWWFHDDK V

Best Arabidopsis Sequence Match ( AT1G45050.1 )
(BLAST)

001: MTSSSAPSRK ALSKIACNRL QKELSEWQLN PPTGFRHKVT DNLQKWTIDV TGAPGTLYAN ETYQLQVEFP EHYPMEAPQV VFVSPAPSHP HIYSNGHICL
101: DILYDSWSPA MTVNSVCISI LSMLSSSPAK QRPADNDRYV KNCKNGRSPK ETRWWFHDDK V

Arabidopsis Description

UBC15Ubiquitin-conjugating enzyme 15 [Source:UniProtKB/Swiss-Prot;Acc:P42743]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.