Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G45050.1 | Thale cress | cytosol | 91.3 | 91.3 |
| Zm00001d033374_P001 | Maize | endoplasmic reticulum, extracellular, nucleus, plastid | 28.57 | 90.2 |
| Os12t0636800-01 | Rice | cytosol | 88.82 | 88.82 |
| Os03t0681400-01 | Rice | cytosol | 88.82 | 88.82 |
| EES17494 | Sorghum | cytosol | 88.2 | 88.2 |
| Bra027470.1-P | Field mustard | plastid | 95.03 | 87.93 |
| CDY32969 | Canola | plastid | 95.03 | 87.93 |
| AT1G75440.1 | Thale cress | nucleus | 87.58 | 87.58 |
| Zm00001d041216_P001 | Maize | extracellular | 87.58 | 87.58 |
| TraesCS5A01G006200.1 | Wheat | cytosol | 86.96 | 86.96 |
| TraesCS5B01G005100.1 | Wheat | cytosol | 86.96 | 86.96 |
| TraesCS5D01G006000.1 | Wheat | cytosol | 86.96 | 86.96 |
| EER91078 | Sorghum | cytosol, plastid | 85.71 | 83.64 |
| TraesCS4A01G288800.1 | Wheat | cytosol | 65.22 | 83.33 |
| HORVU4Hr1G003890.1 | Barley | cytosol, mitochondrion | 81.99 | 80.98 |
| TraesCS4D01G023400.1 | Wheat | cytosol, mitochondrion | 81.99 | 80.98 |
| AT4G36410.1 | Thale cress | nucleus | 80.12 | 80.12 |
| HORVU0Hr1G000080.1 | Barley | extracellular | 36.65 | 78.67 |
| TraesCS4B01G026000.2 | Wheat | cytosol | 81.99 | 75.43 |
| Zm00001d031205_P004 | Maize | cytosol | 73.91 | 69.59 |
| Zm00001d013546_P003 | Maize | mitochondrion, plastid | 83.23 | 63.81 |
| VIT_09s0002g07740.t01 | Wine grape | cytosol | 32.3 | 63.41 |
| CDY43593 | Canola | cytosol | 87.58 | 62.67 |
| VIT_09s0002g07790.t01 | Wine grape | cytosol | 31.06 | 60.98 |
Protein Annotations
| Gene3D:3.10.110.10 | MapMan:35.1 | EntrezGene:834314 | UniProt:A0A178UL24 | ProteinID:AED94898.1 | EMBL:AF028341 |
| ArrayExpress:AT5G42990 | EnsemblPlantsGene:AT5G42990 | RefSeq:AT5G42990 | TAIR:AT5G42990 | RefSeq:AT5G42990-TAIR-G | EnsemblPlants:AT5G42990.1 |
| TAIR:AT5G42990.1 | EMBL:AY058137 | EMBL:AY101537 | Unigene:At.6530 | ProteinID:BAB09201.1 | EMBL:DQ027032 |
| GO:GO:0000166 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR000608 |
| InterPro:IPR016135 | RefSeq:NP_568619.1 | ProteinID:OAO94240.1 | PFAM:PF00179 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00183 | PFscan:PS50127 |
| PANTHER:PTHR44452 | PANTHER:PTHR44452:SF1 | UniProt:Q9FMM0 | SMART:SM00212 | SUPFAM:SSF54495 | Symbol:UBC18 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI00000AB186 | SEG:seg | : |
Description
UBC18Probable ubiquitin-conjugating enzyme E2 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM0]
Coordinates
chr5:-:17243987..17245988
Molecular Weight (calculated)
18372.8 Da
IEP (calculated)
8.327
GRAVY (calculated)
-0.570
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSSSPSRK ALSKIACNRL QKELSEWQVN PPTGFKHRVT DNLQKWVIEV TGAPGTLYAN ETYNLQVEFP QHYPMEAPQV IFVPPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.