Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os05t0397650-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42990.1 | Os05t0397650-00 | AT5G19080.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041216_P001 | Maize | extracellular | 96.27 | 96.27 |
| TraesCS5D01G006000.1 | Wheat | cytosol | 95.65 | 95.65 |
| TraesCS5B01G005100.1 | Wheat | cytosol | 95.65 | 95.65 |
| TraesCS5A01G006200.1 | Wheat | cytosol | 95.65 | 95.65 |
| EES17494 | Sorghum | cytosol | 95.65 | 95.65 |
| Os03t0681400-01 | Rice | cytosol | 95.03 | 95.03 |
| GSMUA_Achr9P25520_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 90.06 | 90.06 |
| GSMUA_Achr4P20980_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 89.44 | 89.44 |
| AT5G42990.1 | Thale cress | cytosol | 88.82 | 88.82 |
| GSMUA_Achr9P10780_001 | Banana | cytosol | 88.2 | 88.2 |
| GSMUA_Achr6P29810_001 | Banana | cytosol | 87.58 | 87.58 |
| Bra036332.1-P | Field mustard | cytosol, mitochondrion, nucleus | 65.84 | 86.89 |
| KRH28745 | Soybean | nucleus | 86.34 | 86.34 |
| KRH76710 | Soybean | nucleus | 86.34 | 86.34 |
| Solyc02g084760.2.1 | Tomato | plastid | 85.71 | 85.71 |
| AT1G45050.1 | Thale cress | cytosol | 85.71 | 85.71 |
| PGSC0003DMT400009304 | Potato | nucleus | 85.71 | 85.71 |
| Solyc04g080810.2.1 | Tomato | mitochondrion, nucleus | 84.47 | 84.47 |
| PGSC0003DMT400009620 | Potato | nucleus | 84.47 | 84.47 |
| HORVU0Hr1G000080.1 | Barley | extracellular | 39.13 | 84.0 |
| CDY12582 | Canola | cytosol | 83.23 | 83.23 |
| CDY47951 | Canola | cytosol | 82.61 | 82.61 |
| CDY32969 | Canola | plastid | 87.58 | 81.03 |
| Bra027470.1-P | Field mustard | plastid | 87.58 | 81.03 |
| CDY25658 | Canola | cytosol | 84.47 | 80.47 |
| Zm00001d031205_P004 | Maize | cytosol | 80.12 | 75.44 |
| CDY43850 | Canola | nucleus | 84.47 | 64.45 |
| Bra032210.1-P | Field mustard | nucleus | 74.53 | 63.49 |
| VIT_09s0002g07740.t01 | Wine grape | cytosol | 31.06 | 60.98 |
| VIT_09s0002g07790.t01 | Wine grape | cytosol | 29.19 | 57.32 |
| CDY43593 | Canola | cytosol | 79.5 | 56.89 |
Protein Annotations
| Gene3D:3.10.110.10 | MapMan:35.1 | EntrezGene:4352894 | ProteinID:ABA99977.1 | ProteinID:BAF30386.1 | ProteinID:BAT18260.1 |
| ProteinID:EEE53670.1 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0031625 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR000608 | InterPro:IPR016135 | EnsemblPlantsGene:Os12g0636800 |
| EnsemblPlants:Os12t0636800-01 | PFAM:PF00179 | PFscan:PS50127 | PANTHER:PTHR44452 | PANTHER:PTHR44452:SF3 | UniProt:Q2QLM1 |
| SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0000680B67 | RefSeq:XP_015618128.1 |
| SEG:seg | : | : | : | : | : |
Description
UBIQUITIN-CONJUGATING ENZYME 26Ubiquitin-conjugating enzyme/RWD-like domain containing protein. (Os12t0636800-01)
Coordinates
chr12:-:27295433..27298714
Molecular Weight (calculated)
18347.7 Da
IEP (calculated)
8.321
GRAVY (calculated)
-0.508
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSSSPSRK ALSKIACNRL QKELAEWQVS PPSGFKYRVS DNLQRWVIEV TGAAGTLYAG ETYQLQVDFP EHYPMEAPQV IFLNPAPMHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPAK QRPQDNDRYV RNCRNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVSSVCISI LSMLSSSPAK QRPQDNDRYV RNCRNGRSPK ETRWWFHDDK V
001: MTSSSSPSRK ALSKIACNRL QKELSEWQVN PPTGFKHRVT DNLQKWVIEV TGAPGTLYAN ETYNLQVEFP QHYPMEAPQV IFVPPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVSSVCISI LSMLSSSPEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
Arabidopsis Description
UBC18Probable ubiquitin-conjugating enzyme E2 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.