CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28745	Soybean	nucleus	100.0	100.0
GSMUA_Achr4P20980_001	Banana	cytosol, mitochondrion, nucleus, plastid	93.17	93.17
VIT_04s0023g02620.t01	Wine grape	nucleus	93.17	93.17
Zm00001d033374_P001	Maize	endoplasmic reticulum, extracellular, nucleus, plastid	28.57	90.2
Os03t0681400-01	Rice	cytosol	88.82	88.82
EES17494	Sorghum	cytosol	86.96	86.96
Zm00001d041216_P001	Maize	extracellular	86.34	86.34
TraesCS5D01G006000.1	Wheat	cytosol	86.34	86.34
TraesCS5B01G005100.1	Wheat	cytosol	86.34	86.34
TraesCS5A01G006200.1	Wheat	cytosol	86.34	86.34
Os12t0636800-01	Rice	cytosol	86.34	86.34
EER91078	Sorghum	cytosol, plastid	84.47	82.42
TraesCS4A01G288800.1	Wheat	cytosol	63.35	80.95
TraesCS4D01G023400.1	Wheat	cytosol, mitochondrion	81.37	80.37
HORVU4Hr1G003890.1	Barley	cytosol, mitochondrion	81.37	80.37
HORVU0Hr1G000080.1	Barley	extracellular	36.02	77.33
TraesCS4B01G026000.2	Wheat	cytosol	81.37	74.86
Zm00001d031205_P004	Maize	cytosol	72.05	67.84
Zm00001d013546_P003	Maize	mitochondrion, plastid	83.85	64.29

Protein Annotations

EntrezGene:100305572	EntrezGene:100785024	Gene3D:3.10.110.10	MapMan:35.1	EMBL:ACUP02000636	EMBL:ACUP02006762
EMBL:BT089239	UniProt:C6SVP6	EnsemblPlantsGene:GLYMA_01G169700	GO:GO:0000166	GO:GO:0000209	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0043161
GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135	ProteinID:KRH28745.1	EnsemblPlants:KRH76710	ProteinID:KRH76710
ProteinID:KRH76710.1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44452	PANTHER:PTHR44452:SF1
MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0000E64AB1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:50714855..50719198

Molecular Weight (calculated)

18433.8 Da

IEP (calculated)

7.985

GRAVY (calculated)

-0.531

Length

161 amino acids

Sequence
(BLAST)

001: MTSSSAAARK NLSKIACNRL QKELVEWQVN PPTGFKHKVT DNLQRWVVEV TGAPGTLYAN ETYQLQVDFP ENYPMEAPQV IFLHPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTTK QRPEDNDRYV KNCRNGRSPK ETRWWFHDDK V

Best Arabidopsis Sequence Match ( AT1G75440.1 )
(BLAST)

001: MSSSGAPSRK TLSKIATNRL QKELVEWQMN PPTGFKHKVT DNLQRWIIEV IGAPGTLYAN DTYQLQVDFP EHYPMESPQV IFLHPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V

Arabidopsis Description

UBC16Probable ubiquitin-conjugating enzyme E2 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.